Probe CUST_1300_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1300_PI426222305 | JHI_St_60k_v1 | DMT400032924 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
All Microarray Probes Designed to Gene DMG400012646
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1300_PI426222305 | JHI_St_60k_v1 | DMT400032924 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
| CUST_771_PI426222305 | JHI_St_60k_v1 | DMT400032926 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
| CUST_918_PI426222305 | JHI_St_60k_v1 | DMT400032927 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
Microarray Signals from CUST_1300_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 2659.32 | 536.917 | 3.22125 | 0.423593 |
| ABA 1h | 2049.68 | 662.901 | 2.63822 | 0.983966 |
| ACC 1h | 2150.1 | 386.756 | 2.54942 | 0.333112 |
| BABA 1h | 1243.05 | 371.651 | 1.45443 | 0.377118 |
| Chitin 1h | 806.478 | 134.755 | 1.09887 | 0.120775 |
| Epi 1h | 1426.99 | 232.175 | 2.01338 | 0.341853 |
| SA 1h | 1097.03 | 262.112 | 1.27241 | 0.219466 |
| Me-JA 1h | 539.818 | 59.8089 | 0.820918 | 0.047639 |
| Control 6h | 1031.47 | 257.605 | 1.20727 | 0.240876 |
| ABA 6h | 256.454 | 15.1646 | 0.3033 | 0.0199283 |
| ACC 6h | 926.282 | 148.093 | 0.98834 | 0.0793332 |
| BABA 6h | 515.287 | 86.9443 | 0.563589 | 0.0957966 |
| Chitin 6h | 765.479 | 210.342 | 0.844158 | 0.201805 |
| Epi 6h | 662.175 | 83.9639 | 0.727127 | 0.0834249 |
| SA 6h | 785.886 | 130.009 | 0.970519 | 0.072341 |
| Me-JA 6h | 438.759 | 60.7687 | 0.543944 | 0.0605217 |
Source Transcript PGSC0003DMT400032924 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc02g093720.2 | +1 | 0.0 | 739 | 446/491 (91%) | genomic_reference:SL2.50ch02 gene_region:49041484-49045270 transcript_region:SL2.50ch02:49041484..49045270- functional_description:Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 |
| TAIR PP10 | AT5G40700.2 | +1 | 7e-24 | 103 | 59/134 (44%) | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 475 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143; Viruses - 7; Other Eukaryotes - 138 (source: NCBI BLink). | chr5:16292047-16293443 REVERSE LENGTH=303 |