Probe CUST_33497_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_33497_PI426222305 | JHI_St_60k_v1 | DMT400045410 | TTTCTATCTATGAGGTAGAGGTAGGAGGTAAGGTCTGCGTATACTCTACCTTTACCAGGC |
All Microarray Probes Designed to Gene DMG400017619
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_33497_PI426222305 | JHI_St_60k_v1 | DMT400045410 | TTTCTATCTATGAGGTAGAGGTAGGAGGTAAGGTCTGCGTATACTCTACCTTTACCAGGC |
| CUST_33482_PI426222305 | JHI_St_60k_v1 | DMT400045409 | CACAACCCACTGTATGTATGTTCTTTATATGTATCATCAGTATACACTAAATCAAGGACC |
| CUST_33570_PI426222305 | JHI_St_60k_v1 | DMT400045411 | CACAACCCACTGTATGTATGTTCTTTATATGTATCATCAGTATACACTAAATCAAGGACC |
Microarray Signals from CUST_33497_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 215.51 | 32.3725 | 0.867207 | 0.104604 |
| ABA 1h | 291.02 | 41.6689 | 1.32716 | 0.149657 |
| ACC 1h | 199.113 | 25.4025 | 0.786104 | 0.0493933 |
| BABA 1h | 236.466 | 37.7532 | 0.98396 | 0.0706015 |
| Chitin 1h | 206.878 | 16.8101 | 0.943473 | 0.0565821 |
| Epi 1h | 200.36 | 19.4986 | 0.945891 | 0.0830439 |
| SA 1h | 243.331 | 19.2345 | 0.971817 | 0.0657563 |
| Me-JA 1h | 200.905 | 12.8343 | 1.01167 | 0.130326 |
| Control 6h | 280.873 | 40.1568 | 1.13072 | 0.0784079 |
| ABA 6h | 507.906 | 30.1533 | 1.96497 | 0.114293 |
| ACC 6h | 258.91 | 34.0018 | 0.915805 | 0.0548621 |
| BABA 6h | 286.505 | 17.4769 | 1.05252 | 0.0623916 |
| Chitin 6h | 273.853 | 43.6354 | 1.03732 | 0.128184 |
| Epi 6h | 246.468 | 19.3904 | 0.896659 | 0.0553698 |
| SA 6h | 222.892 | 54.9456 | 0.860033 | 0.155818 |
| Me-JA 6h | 233.445 | 38.2129 | 0.938596 | 0.0941928 |
Source Transcript PGSC0003DMT400045410 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 | AT2G02590.1 | +2 | 8e-32 | 123 | 59/81 (73%) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:704977-706494 FORWARD LENGTH=324 |