Probe CUST_11066_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_11066_PI426222305 | JHI_St_60k_v1 | DMT400037738 | GGTAATTAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGT |
All Microarray Probes Designed to Gene DMG401014557
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_11129_PI426222305 | JHI_St_60k_v1 | DMT400037741 | TGTATACTCTCTTCATCATCCACTTACCATCGAAAGTTATGTTTAGTGGATCTTGAGCCT |
| CUST_10997_PI426222305 | JHI_St_60k_v1 | DMT400037740 | GGTTATTGGGATAGCTTGGAAAATTTACAAGAGGAGATCAGTCGTTTCCAGAAGAACTGG |
| CUST_11066_PI426222305 | JHI_St_60k_v1 | DMT400037738 | GGTAATTAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGT |
| CUST_11025_PI426222305 | JHI_St_60k_v1 | DMT400037742 | CTTCAGCTTCTGGATATTGACAGATAGACGATATAGACCATCGTTCTTCATGTCATTGCT |
Microarray Signals from CUST_11066_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 29.0627 | 3.9558 | 1.09787 | 0.157848 |
| ABA 1h | 27.0821 | 9.07898 | 0.988718 | 0.455973 |
| ACC 1h | 19.9028 | 5.9002 | 0.658626 | 0.215602 |
| BABA 1h | 20.8159 | 7.9352 | 0.677154 | 0.298957 |
| Chitin 1h | 18.5582 | 4.56515 | 0.751346 | 0.170799 |
| Epi 1h | 10.1535 | 3.61145 | 0.428623 | 0.170634 |
| SA 1h | 26.9958 | 4.00346 | 0.988342 | 0.1541 |
| Me-JA 1h | 9.38421 | 3.82673 | 0.396527 | 0.191905 |
| Control 6h | 56.1373 | 20.5764 | 1.80702 | 0.7338 |
| ABA 6h | 28.5144 | 7.79909 | 0.944187 | 0.281729 |
| ACC 6h | 32.2688 | 5.79522 | 1.04684 | 0.217211 |
| BABA 6h | 46.7343 | 20.5306 | 1.17496 | 0.937934 |
| Chitin 6h | 48.6016 | 5.4375 | 1.73458 | 0.220641 |
| Epi 6h | 49.5196 | 24.8598 | 1.14381 | 1.38513 |
| SA 6h | 41.794 | 4.58208 | 1.60917 | 0.179718 |
| Me-JA 6h | 37.2598 | 15.5401 | 0.99888 | 0.890036 |
Source Transcript PGSC0003DMT400037738 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 | AT5G08720.1 | +2 | 9e-153 | 323 | 166/268 (62%) | CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2841536-2845335 REVERSE LENGTH=719 |