Probe CUST_11129_PI426222305 - General Information

Probe IDChip nameTranscript IDProbe Sequence
CUST_11129_PI426222305 JHI_St_60k_v1 DMT400037741 TGTATACTCTCTTCATCATCCACTTACCATCGAAAGTTATGTTTAGTGGATCTTGAGCCT

All Microarray Probes Designed to Gene DMG401014557

Probe IDChip nameTranscript IDProbe Sequence
CUST_11129_PI426222305 JHI_St_60k_v1 DMT400037741 TGTATACTCTCTTCATCATCCACTTACCATCGAAAGTTATGTTTAGTGGATCTTGAGCCT
CUST_10997_PI426222305 JHI_St_60k_v1 DMT400037740 GGTTATTGGGATAGCTTGGAAAATTTACAAGAGGAGATCAGTCGTTTCCAGAAGAACTGG
CUST_11066_PI426222305 JHI_St_60k_v1 DMT400037738 GGTAATTAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGT
CUST_11025_PI426222305 JHI_St_60k_v1 DMT400037742 CTTCAGCTTCTGGATATTGACAGATAGACGATATAGACCATCGTTCTTCATGTCATTGCT


Microarray Signals from CUST_11129_PI426222305



TreatmentRaw signalRaw Std ErrNormalized signalNormalized Std Err
Control 1h19.91223.333971.33360.232978
ABA 1h15.86864.059751.146790.374625
ACC 1h20.48184.80391.274240.279942
BABA 1h13.85013.457480.9525020.256002
Chitin 1h13.85113.787740.9766080.270832
Epi 1h10.41913.443620.7403280.283326
SA 1h10.68423.238350.6846320.229336
Me-JA 1h7.31853.306220.5749980.286972
Control 6h28.34276.893581.832140.381479
ABA 6h6.000443.479370.3855760.223387
ACC 6h18.18684.20651.051180.247363
BABA 6h18.944210.60460.8528890.555084
Chitin 6h20.99665.253541.24260.403486
Epi 6h27.07038.060061.468940.673714
SA 6h15.87355.39680.988590.494619
Me-JA 6h17.77757.685580.9676440.473006

Source Transcript PGSC0003DMT400037741 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT5G08720.1 +2 0.0 553 284/401 (71%) CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2841536-2845335 REVERSE LENGTH=719

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400037741

Click here to view details at Spud DB Genome Browser (opens in new window)