Probe CUST_11025_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_11025_PI426222305 | JHI_St_60k_v1 | DMT400037742 | CTTCAGCTTCTGGATATTGACAGATAGACGATATAGACCATCGTTCTTCATGTCATTGCT |
All Microarray Probes Designed to Gene DMG401014557
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_11129_PI426222305 | JHI_St_60k_v1 | DMT400037741 | TGTATACTCTCTTCATCATCCACTTACCATCGAAAGTTATGTTTAGTGGATCTTGAGCCT |
| CUST_10997_PI426222305 | JHI_St_60k_v1 | DMT400037740 | GGTTATTGGGATAGCTTGGAAAATTTACAAGAGGAGATCAGTCGTTTCCAGAAGAACTGG |
| CUST_11066_PI426222305 | JHI_St_60k_v1 | DMT400037738 | GGTAATTAATAGACTGTATACTGTGACTTACCTTTTCCTGTGAAGCTGTATTGTTTTGGT |
| CUST_11025_PI426222305 | JHI_St_60k_v1 | DMT400037742 | CTTCAGCTTCTGGATATTGACAGATAGACGATATAGACCATCGTTCTTCATGTCATTGCT |
Microarray Signals from CUST_11025_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 61.128 | 9.13423 | 1.08406 | 0.118558 |
| ABA 1h | 63.6919 | 10.0218 | 1.27478 | 0.212275 |
| ACC 1h | 50.0708 | 7.3998 | 0.862422 | 0.0877334 |
| BABA 1h | 40.3413 | 7.02536 | 0.73718 | 0.0987749 |
| Chitin 1h | 46.3351 | 4.48529 | 0.926311 | 0.0901804 |
| Epi 1h | 43.0538 | 6.66112 | 0.879353 | 0.119138 |
| SA 1h | 36.8357 | 5.03234 | 0.63635 | 0.097664 |
| Me-JA 1h | 29.2733 | 4.02365 | 0.645755 | 0.0882869 |
| Control 6h | 109.124 | 30.2641 | 1.77353 | 0.475467 |
| ABA 6h | 65.607 | 13.0478 | 1.0743 | 0.157299 |
| ACC 6h | 62.7892 | 26.2565 | 0.811466 | 0.30492 |
| BABA 6h | 117.229 | 38.7571 | 1.61768 | 0.732322 |
| Chitin 6h | 115.323 | 28.5588 | 1.82275 | 0.569387 |
| Epi 6h | 93.2996 | 26.6934 | 1.33909 | 0.66427 |
| SA 6h | 55.8688 | 26.3257 | 0.637589 | 1.20702 |
| Me-JA 6h | 97.1221 | 47.7673 | 1.33823 | 0.729428 |
Source Transcript PGSC0003DMT400037742 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 | AT5G08720.1 | +3 | 1e-50 | 189 | 102/156 (65%) | CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2841536-2845335 REVERSE LENGTH=719 |