barSeed - Barley Seed Development Database

Probe CUST_9890_PI390587928

Source Contig U35_15452

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9890_PI390587928	Hv_44K_v2	GCACTGGTGATGGTTTGATGTCGCGTTGATGCAAATGGGGATGATCTTCGGCTTCGCCTG	617	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375791	733	2e-24	633 - 692	100	60 / 60	plus	ABC03284 ABC03285 ABC03286 ABC03287 ABC03288 ABC03289
MLOC	MLOC_24520.1	459	2e-24	151 - 210	100	60 / 60	plus	ABC03285 ABC03286 ABC03287
JLOC1	JLOC1_16847.1	460	8e-25	154 - 213	100	60 / 60	plus
Harvest21	ABC03285	737	3e-25	618 - 677	100	60 / 60	plus	ABC03285
Harvest35	U35_15452	713	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_15452 713 Hv_44K_v2
CAAGATTCAAGAAACAATCCAACGCAGTCCAACCCGAGGAGATCGATCGAGCTCGAGATC
AGCCGGCAAGAATGGCGGGCATGGTGTTCGGCTTGGAGAACCCGATGATGACGGCGCTGC
AGCACCTGCTGGACTTCCCGGATGGCGAGGCCGGCGGACCAGGCAACACCGGCGGCGAGA
AGCAGGGTCCGACACGCACCTACGTCCGCGACGCGCGCGCCATGGCGGCCACACCGGCCG
ACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTCGGGTCCG
GCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTCGTCATCAGCGGCGAGCGGGGGA
GGGAGGAGAAGGAGGACGCCAGGTACCTGCGGATGGAGCGTCGCATGGGCAAGATGATGC
GCAAGTTCGTGCTCCCCGACAACGCCGACATGGAGAAGATCTCCGCCGCGTGCCGCGACG
GCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGCCCAAGAAGCCCAAGACCA
TCCAGGTCCAGGTCGCCTGAGAATGAGATGCGTGGTGTGCGCGTCGAGTCGAAGCAGAGT
GTCGTGTCGGTTCGTGTGCACTGGTGATGGTTTGATGTCGCGTTGATGCAAATGGGGATG
ATCTTCGGCTTCGCCTGAATAAAACATTTTTTAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08860.1	167	5e-55	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi2g05380.1	166	4e-67
Arabidopsis v10	None