barSeed - Barley Seed Development Database

Probe CUST_9889_PI390587928

Source Contig U35_15453

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9889_PI390587928	Hv_44K_v2	ATATTCAACAAGCAATCCAAACTTCCAAACTCCAAAACAGCCCAACCGGAGGAGATCGAT	6	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.467	0.543	0.892	1.298	3.937	13.482
Raw	11.539	20.007	28.255	67.348	70.926	270.466

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32229.1	1072	2e-24	850 - 909	100	60 / 60	minus	ABC03284 ABC03285 ABC03286 ABC03287 ABC03288 ABC03289
JLOC1	JLOC1_21053.1	987	8e-25	796 - 855	100	60 / 60	minus
Harvest21	ABC03286	805	3e-25	7 - 66	100	60 / 60	plus	ABC03286
Harvest35	U35_15453	805	3e-25	7 - 66	100	60 / 60	plus

Contig Sequence (805 bp)

>U35_15453 805 Hv_44K_v2
GCACAAATATTCAACAAGCAATCCAAACTTCCAAACTCCAAAACAGCCCAACCGGAGGAG
ATCGATCGAGCTCGAGATCAGCCAGCGAGAAATGGCGGGCATGGTGTTCGGCTTGGAGGC
CCCGATGATGACAGCCCTGCAGCACCTGCTGGACACCCCGGACGGTGAGTCCGGTGCCGC
CGCCGGCGAGAAGCAGGGCCCGACGCGCGCCTACGTCCGCGACGCGCGCGCCATGGCGGC
CACCCCTGCCGACGTGAAGGAGCTGCCAGGCGCGTACGCGTTCGTGGTGGACATGCCGGG
GCTCGGGTCCGGCGACATCAAGGTGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGG
CGAGCGCCGGAGGGAGGAGAAGGAGGACGCCAGGTACGTGCGGATGGAGCGCCGCATGGG
CAAGATGATGCGCAAGTTCGTGCTCCCCGAGAACGCCGACATGGAGAAGATCTCCGCCGC
GTGCCGCGATGGCGTGCTCACCGTCACCGTCGAGAAGCTGCCGCCGCCCGAGCCTAAGAA
GCCCAAGACCATCCAGGTCCAGGTCGCCTGAAAATGAGATGCATGGTGTGCGCGTCGAAT
CGAAGCAGAGTATGAGTCGGTAGCGTGTTTGCTGTGATGAGTGGTGGAGTGTCAGTCTTT
TCGTTTCGTCTGCTAGACGAGGGTGTGCCGTGTCGGTTCGTGCGCAGGTGGTGATGGTTT
GATGTTTCGTTAATGGTAATGGGGATGTTCTCCGGTTAATTAAAAAAAAAAAAAGCGAAT
CCCTTGGCCAAAAAAAAAAAAAAAA

Homology of Contig U35_15453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08860.1	167	1e-60	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi2g05380.1	166	1e-72
Arabidopsis v10	None