- Probe CUST_9887_PI390587928
- Source Contig U35_15455
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9887_PI390587928 | Hv_44K_v2 | ATTGATCAAGCTCGTGATCAGCCAGCAAGAATGGCGGGCATGGTGTTCGGCTTGGAGACC | 38 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.081 | 0.187 | 0.629 | 1.398 | 3.369 | 8.132 |
| Raw | 32.617 | 116.212 | 311.896 | 1062.785 | 896.449 | 2426.967 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375970 | 746 | 7e-23 | 54 - 113 | 98 | 59 / 60 | plus | ABC03284 ABC03285 ABC03286 ABC03287 ABC03288 ABC03289 ABC32683 |
| Harvest21 | ABC03288 | 592 | 3e-25 | 40 - 99 | 100 | 60 / 60 | plus | ABC03288 |
| Harvest21 | ABC03290 | 415 | 1e-23 | 39 - 98 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC03284 | 644 | 1e-23 | 42 - 101 | 98 | 59 / 60 | plus | ABC03284 |
| Harvest35 | U35_15455 | 508 | 3e-25 | 39 - 98 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15451 | 733 | 1e-23 | 42 - 101 | 98 | 59 / 60 | plus |
Contig Sequence (508 bp)
>U35_15455 508 Hv_44K_v2 AATTCAACAAGCAATCCAACGCAGTCCAACCCGAGGAGATTGATCAAGCTCGTGATCAGC CAGCAAGAATGGCGGGCATGGTGTTCGGCTTGGAGACCCCGATGATGACCGCCCTGCAGC ACCTGCTGGACATCCCAGACGGCGAGGCTGGTGCCGCCGGCGGCGAGAAGCAGGGCCCGA CGCGCGCCTACGTCCGCGACGCGCGCGCCATGGCGGCCACCCCCGCCGACGTGAAGGAGC TGCCGGACGCGTTCGCGTTCGTGGTGGACATGCCGGGGCTCGGGTCCGTTGACATCAAGG TGCAGGTGGAGGACGAGCGGGTGCTGGTCATCAGCGGCGAGCGGCGCAGGGAGGAGAAGG AGGACGCCAAGTTCGTGCGGATGGAGCGCCGCATGGGCAAGCTGATGCGCAAGTTCGTGC TCCCCGAGAACGCCGACATGGAGAAGATCTCCGCCGCGTGCCGCGACGGCGTGCTCACCG TCACCGTCGAGAAGCTGCCGCCGCCCGA
Homology of Contig U35_15455 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g08860.1 | 167 | 3e-69 | protein|hsp20/alpha crystallin family protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g05380.1 | 166 | 6e-80 | |
| Arabidopsis v10 | AT5G12020.1 | 155 | 1e-52 | | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155 |