barSeed - Barley Seed Development Database

Probe CUST_9552_PI390587928

Source Contig U35_13895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9552_PI390587928	Hv_44K_v2	GGCATATCAAGCTCATCTTCTCATCACGTCGTCCAAAACAATTAAATTGCAGGTAAAGGA	515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249203.1	1752	2e-24	1458 - 1517	100	60 / 60	plus	ABC01013 ABC01017 ABC01019 ABC49625
MLOC	AK249593.1	1814	2e-24	1540 - 1599	100	60 / 60	plus	ABC01013 ABC01017 ABC01019 ABC49625
MLOC	MLOC_46999.3	878	2e-24	307 - 366	100	60 / 60	minus	ABC01013 ABC01017 ABC49625
Harvest21	ABC01017	1129	3e-25	749 - 808	100	60 / 60	plus	ABC01017
Harvest35	U35_13895	897	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (897 bp)

>U35_13895 897 Hv_44K_v2
GCGACAATGTCAGTGACGAGTCTGTCGTCAAGATCGTCGACACCTTCCCAGGACAATCCA
TTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGAGGTGCGCAAGTGGGTCG
GCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAACTCGCGGGACGGGCCCGTGA
CCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTACGGGCACATGCTCGTCC
AGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGCTC
TGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTCTACGGTTAGAAAATTCTCC
ATACACACCCACCATCTCTTGCTGCATAGGAGGTGAACTACGCACAATCTTCTTATACTT
TCAGCAACTACTTTACATGCATACTTCTTTCTCACTTTCTTACTTCGGAAAAAAAAAGGG
AGTGGAGGCCTGTTTTTCTTACCTGCTCTTCCGCCGGCATATCAAGCTCATCTTCTCATC
ACGTCGTCCAAAACAATTAAATTGCAGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGC
CGGAAGGTTGCACCGACCAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACG
GCAGCTGCCTTTACACCTTTTAAGCATGCCACTTTTAATATCTGATGTTTTACCTACCTA
AGTCCGCATCGCATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATAT
TGAGTATACCCATTTGGCAAAGACCAATACACCTACTTATCATTTGTCACTAACAGTAAA
AAAAACCTTCAGTGGAGACTCCTTCTGCTTTGTTGCAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_13895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g47970.1	467	5e-60	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi4g09125.1	429	2e-67
Arabidopsis v10	AT2G39730.1	474	6e-52	\| Symbols: RCA \| rubisco activase \| chr2:16570951-16573345 REVERSE LENGTH=474