barSeed - Barley Seed Development Database

Probe CUST_908_PI390587928

Source Contig U35_6366

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_908_PI390587928	Hv_44K_v2	AGAGTGGTGCTGAGAAGGTCAGTCAATGAGATATGCCTCTTGTGTTGTTGTACTAAAAAA	1137	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68976.1	2852	9e-22	2104 - 2158	100	55 / 55	plus	ABC04206 ABC06409 ABC17547 ABC18311 ABC20877 ABC22130
JLOC1	JLOC1_45686.1	2507	5e-22	2138 - 2192	100	55 / 55	plus
Harvest21	ABC17547	1282	2e-22	1123 - 1177	100	55 / 55	plus	ABC17547
Harvest35	U35_6366	1208	3e-25	1138 - 1197	100	60 / 60	plus
Harvest35	U35_6365	666	2e-22	461 - 515	100	55 / 55	plus

Contig Sequence (1208 bp)

>U35_6366 1208 Hv_44K_v2
GCGGAGCTTCAACCTCGGCGGGATGGGCTGCAGCGCCGGCGTCATCGCCATCGACCTCGC
GCGCGACATGCTCCAGGTGCACCGCGGCACCTACGCCGTGGTGGTGAGCACGGAGAACAT
CACGCAGAACTGGTACTTCGGCAACCGCAAGTCGATGCTCATCCCCAACTGCCTCTTCCG
CGTCGGCTGCTCGGCGGTGCTCCTCTCCAACCGCGGCGCCGACCGCCGCCGTGCCAAGTA
CAGCCTCAAGCACGTGGTGCGCACGCACAAGGGCGCCGACGACAAGGCCTTCAACTGCGT
GTACCAGGAGCAGGACAGCGAGGGCAAGACCGGCGTGTCCCTGTCCAAGGACCTGATGGC
GATCGCCGGCGGCGCGCTCAAGACCAACATCACGACCCTCGGCCCACTCGTGCTCCCCTT
CAGCGAGCAGCTGCTCTTCTTCGCCACGCTGGTGTCCAAGAAGCTCTTCAACGCCAAGGT
GAAGCCTTACATCCCGGACTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACGCCGGCGG
GCGCGCGGTGATCGACGAGCTGGAGAAGAACCTGCAGCTGCAGCCGGTGCACGTGGAGGC
GTCCCGGATGACGCTGCACCGGTTCGGCAACACCTCGAGCAGCTCCATCTGGTACGAGCT
CGCCTACATGGAGGCCAAAGGCCGCGTCCGGCGCGGCGACCGCATCTGGCAGATCGCCTT
CGGCAGCGGCTTCAAGTGCAACAGCGCCGTCTGGCACGCCCTGCGCAACGTCAAGCCGTC
ACCCACCACCCCCTGGGACGACTGCATCGACCGCTACCCGGTGGAGCTCGTCGACGGCTT
CCCCACCCACACCCACACCCACAAGTAGCAGCAGCAGCAGCAAGCACCCATGGCCATTGG
AGCTCTTCCTGATACAGAAACCTCACTCAGAATGGATCAATTCAAATCCATTTATGGCTG
GTTACAAGAGACACAGTTAATGGTACTGCAAGAATGAATCTCCAGGCGTGGTGCAAGTCT
GCTCTGCTCTGCTCTGATCTGATCTGTATGAATGCAACTCTGTGCTCATCTTCAAGAAGG
TTTTGACCATCCTGCCCTGACCCTGTGGTGGTAATTTTACTCCAGTAGTAGCATAGCAGA
GTGGTGCTGAGAAGGTCAGTCAATGAGATATGCCTCTTGTGTTGTTGTACTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_6366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49290.3	515	0.0	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi2g16050.1	519	0.0
Arabidopsis v10	AT1G19440.1	516	3e-171	\| Symbols: KCS4 \| 3-ketoacyl-CoA synthase 4 \| chr1:6729119-6730669 FORWARD LENGTH=516