barSeed - Barley Seed Development Database

Probe CUST_9041_PI390587928

Source Contig U35_14415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9041_PI390587928	Hv_44K_v2	ATATCTTTGTACTTGGTGCCATGGATGTTCTGTTATGTTATTCTTCCACCCTTTTGTTGC	452	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62908.1	624	2e-24	77 - 136	100	60 / 60	minus	ABC01547 ABC01549 ABC01555 ABC01556 ABC01557
JLOC1	JLOC1_41195.1	860	8e-25	567 - 626	100	60 / 60	plus
Harvest21	ABC01554	525	3e-25	453 - 512	100	60 / 60	plus
Harvest21	ABC01547	756	1e-23	445 - 501	100	57 / 57	plus	ABC01547
Harvest35	U35_14415	526	3e-25	453 - 512	100	60 / 60	plus
Harvest35	U35_14410	756	5e-23	445 - 500	100	56 / 56	plus

Contig Sequence (526 bp)

>U35_14415 526 Hv_44K_v2
CAGCTCGCCCCCGTCTCCCGGATTTCGCCGCCGCCGCCGCTCGCCGCCGCTCGCCGCCCA
CGCTTCCTACCCGCCGACGAGATGACGAAGCGTACCAAGAAAGCTGGAATTGTCGGCAAA
TATGGTACACGTTATGGTGCCAGTCTGCGTAAGCAGATCAAGAAGATGGAGGTGTCTCAG
CACTCAAAGTACTTCTGTGAGTTCTGTGGGAAGTTTGCTGTGAAGAGGAAAGCAGTTGGA
ATTTGGGGATGCAAGGACTGTGGGAAGGTGAAGGCTGGCGGTGCTTACACCATGAACACT
GCCAGCGCGGTCACTGTCAGGAGCACTATCCGTCGCTTGAGGGAACAGACTGAAGCATAA
GTTGTTACTAGTGTTTTGTCCTAGTGAATCATCTGGGATTTTGCAGTTTAGACGATACTT
TGGATTCAGTTCCGTTGCCTGTTTAGTCAAGGATATCTTTGTACTTGGTGCCATGGATGT
TCTGTTATGTTATTCTTCCACCCTTTTGTTGCCAANNAAAAAAAAA

Homology of Contig U35_14415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48320.1	93	1e-61	protein\|60S ribosomal protein L37a, putative, expressed
Brachypodium v1_2	Bradi2g46580.1	93	6e-62
Arabidopsis v10	AT3G10950.1	92	3e-58	Zinc-binding ribosomal protein family protein \| chr3:3423893-3424566 FORWARD LENGTH=92