barSeed - Barley Seed Development Database

Probe ABC01549

Source Contig ABC01549

barSeed

Links

Affymetrix Source Sequence (643 bp)

>ABC01549 643
GGCGCGCCGCCATCTCCCCGTCTACGCCGCAGCAGCCGCCTCCTGCTACTCGCCGCCGAG
ATGACGAAGCGCACCAAGAAGGCTGGAATCGTCGGGAAGTATGGAACCAGGTATGGTGCC
AGTCTGCGTAAGCAGATCAAGAAGATGGAGGTGTCTCAGCACTCCAAGTACTTCTGTGAA
TTCTGCGGGAAGTTTGCTGTGAAGAGGAAAGCTGTTGGAATTTGGGGATGCAAGGACTGT
GGGAAGGTCAAGGCTGGTGGTGCCTATACCATGAACACGGCTAGTGCGGTCACCGTCAGG
AGCACCATCCGCCGTTTGAGGGAGCAGACCGAAGCTTGATCGCACTACTACTGTTATCTT
GAGGAATTCAGTAGTTCTGTAGTGGAATTAAAGACTTCAAATATCTGTATTTTGGCTATT
CAGCAACGGATATCTGTTAGTAATTTTGTCTTCTGATTTTAGGATCTTTGAAACCTGGAG
GCATGTCCCTACAGTTGCCTGTTATGCTTTATGTCATCCTGTTTCTATTTGTGATGCCAA
AAAAAAAAAAAAAAAAAAAAATTCGCCTGTCTCCCAGTCTCATAACCCAAAAAAAACAAC
CCCAATCTAATCTTTTGGAAAATATATTATACTCCCTCTGTCT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_56911.1	593	0.0	1 - 478	100	478 / 478	None	ABC01547 ABC01549 ABC01555 ABC01556 ABC01557
AK371024	568	8e-108	86 - 389	90	276 / 307	None	ABC01547 ABC01549 ABC01555 ABC01556 ABC01557
MLOC_38730.1	500	8e-108	166 - 469	90	276 / 307	None	ABC01547 ABC01549 ABC01555 ABC01556 ABC01557
MLOC_62908.1	624	2e-104	233 - 522	90	262 / 290	CUST_9041_PI390587928	ABC01547 ABC01549 ABC01555 ABC01556 ABC01557