barSeed - Barley Seed Development Database

Probe CUST_6811_PI390587928

Source Contig U35_34177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6811_PI390587928	Hv_44K_v2	ATGACTCCATTGTTGTGCTGTCAACAAGGATAACCAGAGGCTCCAAAAGTGTGTCTGTTG	63	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34565.6	4086	7e-23	1483 - 1542	98	59 / 60	plus	ABC06725 ABC07662 ABC07663 ABC11306 ABC16504
MLOC	MLOC_34565.1	3041	7e-23	2097 - 2156	98	59 / 60	plus	ABC11306 ABC16504
MLOC	MLOC_34565.5	2852	7e-23	1856 - 1915	98	59 / 60	plus	ABC11306 ABC16504
MLOC	MLOC_34565.2	3147	7e-23	2067 - 2126	98	59 / 60	plus	ABC11306 ABC16504
MLOC	MLOC_34565.7	1493	7e-23	460 - 519	98	59 / 60	plus	ABC16504
MLOC	MLOC_34565.4	3078	7e-23	1847 - 1906	98	59 / 60	plus	ABC07662 ABC07663 ABC11306 ABC16504
MLOC	MLOC_34565.3	3181	7e-23	2054 - 2113	98	59 / 60	plus	ABC11306 ABC16504
JLOC1	JLOC1_22303.6	2783	4e-23	1398 - 1457	98	59 / 60	plus
JLOC1	JLOC1_22303.5	2799	4e-23	1414 - 1473	98	59 / 60	plus
JLOC1	JLOC1_22303.4	2788	4e-23	1403 - 1462	98	59 / 60	plus
JLOC1	JLOC1_22303.3	2655	4e-23	1522 - 1581	98	59 / 60	plus
JLOC1	JLOC1_22303.2	2812	4e-23	1679 - 1738	98	59 / 60	plus
JLOC1	JLOC1_22303.1	2698	4e-23	1565 - 1624	98	59 / 60	plus
Harvest21	ABC16504	1274	1e-23	932 - 991	98	59 / 60	minus	ABC16504
Harvest35	U35_34177	363	3e-25	64 - 123	100	60 / 60	minus
Harvest35	U35_20759	1475	1e-23	471 - 530	98	59 / 60	plus

Contig Sequence (363 bp)

>U35_34177 363 Hv_44K_v2
TGCGATCACCTGCGAAGACCATGGTGATAAGGTGATAGTTTCCCCTGGGCACCCTCTCCA
CTCCAACAGACACACTTTTGGAGCCTCTGGTTATCCTTGTTGACAGCACAACAATGGAGT
CATTAATGTCAACTTCCTTGCCACGCAAGTCTCGGAATATACCAGTCTTACTGGCATGAA
TCAGAGTGTCCTGGACAAGGCAGTCAGCTTTATCGACATTATCAAGGAAGATGACAGATC
GCCGTTTCTTGCTCAGCTCGTCAACAATATAGTCAGTGCCAGTCTTTCCTCTGTAACTTG
AGTCGGCCCAATCCTGGAGACTCAGGTCCAGATAAATCATGTTCTCTTTGCTGCCATGTA
CGA

Homology of Contig U35_34177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g26750.1	1123	5e-53
Arabidopsis v10	None