barSeed - Barley Seed Development Database

Probe CUST_6663_PI390587928

Source Contig U35_747

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6663_PI390587928	Hv_44K_v2	TATCACCACCATCTTGTGTTTGCTAATCTAGTTCCTATTTGCTGCAACAGTCAAGGACGA	224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10958.1	2750	2e-24	1240 - 1299	100	60 / 60	plus	ABC02358 ABC02360 ABC14804 ABC25340 ABC45454
MLOC	MLOC_10957.3	1930	2e-24	1240 - 1299	100	60 / 60	plus	ABC02358 ABC02360 ABC45454
JLOC1	JLOC1_7214.1	2258	8e-25	1125 - 1184	100	60 / 60	minus
Harvest35	U35_747	677	3e-25	225 - 284	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_747 677 Hv_44K_v2
GCACGAGGGACACTTCCAGCTCGTGTCAGGCCTCCCGGTTGTCGACAGCGCCCGCCGATG
TGTCGGGGTCGTCGTCAAGAGCGATCGCGCGAGGGCTTCACATGGGGTCAGCTCAGCTCC
TCCCCCTTCTCTCTTCATCTGTTTTACACACAACTCTTGCCGCCTTTCGGACCGGGAGAA
GAAGAAGAAAAAGACAGCTAATATACAAGTTGCTACATCAACAATATCACCACCATCTTG
TGTTTGCTAATCTAGTTCCTATTTGCTGCAACAGTCAAGGACGAAGATTGCAGATGTGAT
GACATCTCCAGCAATCACGCTATCATGCGATAAAACAGTGACCGATGCCGCAGCTCTGAT
GCTCAAGAAGAAGATCCACAGATTACCGATAGTAAACCAGGACAATCAAGTAATAGGTAT
AGTTACCCGCGATGACGTTCTTCGCGCGTTGGAGGCCATGCTGAAGTTTTAGAGGCGCAG
GAGTCCATGCCCGGTACTTGTGGATCTGTAAATATGTGTGTCCGCGGTACTTTTGAGTAG
CAGGCAGATCCTATAGATGTAAAAGTGTTTGTAGCCTGTATCGCAAAAATATGCCTGGGA
GCATTTAGGAGAGCTTTTCCTTGTAAAAAAGCACGCCAGGAAGATTCTGTTCTGTACTGT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None