- Probe CUST_6661_PI390587928
- Source Contig U35_749
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6661_PI390587928 | Hv_44K_v2 | ATCGCAAAAATAAGCCTGGGAGCATTTAGGAGAGCTTTTCCTTGTAAAGAAGCACGCCAG | 801 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371248 | 2660 | 7e-23 | 2580 - 2639 | 98 | 59 / 60 | plus | ABC02358 ABC02360 ABC08892 ABC45454 |
| MLOC | AK251025.1 | 928 | 7e-23 | 827 - 886 | 98 | 59 / 60 | plus | ABC02358 ABC02360 ABC45454 |
| MLOC | MLOC_10958.1 | 2750 | 7e-23 | 1815 - 1874 | 98 | 59 / 60 | plus | ABC02358 ABC02360 ABC14804 ABC25340 ABC45454 |
| MLOC | MLOC_10957.3 | 1930 | 7e-23 | 1815 - 1874 | 98 | 59 / 60 | plus | ABC02358 ABC02360 ABC45454 |
| MLOC | MLOC_10957.1 | 1467 | 7e-23 | 1369 - 1428 | 98 | 59 / 60 | plus | ABC02358 ABC02360 ABC45454 |
| JLOC1 | JLOC1_7214.1 | 2258 | 4e-23 | 550 - 609 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_7213.1 | 2368 | 4e-23 | 1265 - 1324 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC49539 | 587 | 3e-25 | 265 - 324 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02359 | 964 | 3e-25 | 802 - 861 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40396 | 276 | 1e-23 | 50 - 109 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02360 | 2220 | 1e-23 | 1597 - 1656 | 98 | 59 / 60 | minus | ABC02360 |
| Harvest21 | ABC02358 | 1038 | 1e-23 | 811 - 870 | 98 | 59 / 60 | plus | ABC02358 |
| Harvest35 | U35_47943 | 587 | 3e-25 | 265 - 324 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_749 | 975 | 3e-25 | 802 - 861 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_750 | 2220 | 1e-23 | 1597 - 1656 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_748 | 1037 | 1e-23 | 811 - 870 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_747 | 677 | 6e-22 | 580 - 639 | 97 | 58 / 60 | plus |
Contig Sequence (975 bp)
>U35_749 975 Hv_44K_v2 CAGACAACATCCACAACACAAGACAAGGAGAATAGCATCCATGGCGTGCATCAATACCTT GCAGAGCTGCTCCATGTTCAAGGGGGCCAAGGCCGAGGCCAGAAGGGGCAGCAGAGCCGG CAGCGGCGGGAGCTTCGGGTGCCGGGCGTCCACGTTCATGGACGGGAGCGGGCTCCGGCT CGGGCTCGACGAGAACCCCGACGCCATCATCTCCGGCGAGTGGCCCGAGAACTTCTCCCT CCTCAGCTACGACGACCTCCGCGCATACCTCCAGTCCCAGCAGCAGCAGCAACCACCTTC CCACGCCGGCGATCAGCACCGAGGGGCGCTCCTGCGAGAGGCCATGTCGACGCCGGTGCT GATGGCCACAGCGGACCAGACGCTGGTGGAGGTTGAAGGCCACTTCCAGCTCGTGTCAGG CCTCCCGGTTGTCGACAGCGCCCGCCGATGTGTCGGGGTCGTCGTCAAGAGCGATCGCGC GAGGGCTTCACATGGGTCAAGGACGAAGATTGCAGATGTGATGACATCTCCAGCAATCAC GCTATCATGCGATAAAACAGTGACTGATGCCGCAGCTCTGATGCTCAAGAAGAAGATCCA CAGATTACCGATAGTAGACCAGGACAATCAAGTAATAGGTATAGTTACCCGCGATGACGT TCTTCGCGCGTTGGAGGCCATGCTGAAGTATTAGAGGCGCAGGAGTCCGTGCCCGGTACT TGTGGATCTGTAAATATGTGTGTCCGCGGTACTTTTGAGTAGCAGGCAGATCCTATAGAT GTAAAAGTGTTTGTAGCCCGTATCGCAAAAATAAGCCTGGGAGCATTTAGGAGAGCTTTT CCTTGTAAAGAAGCACGCCAGGAAGATTCTGTTCTGTACTGTACTGTACTGTTTGGTGTC TGCGCATGAAAATGTTTCCATGAGCAAAAAAAAAAAAAAAACTTCCACATTCCACAGCAA GAAAAATAAAAGCTC
Homology of Contig U35_749 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g57280.1 | 213 | 4e-87 | protein|CBS domain containing membrane protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g55440.5 | 213 | 9e-97 | |
| Arabidopsis v10 | None |