barSeed - Barley Seed Development Database

Probe CUST_5222_PI390587928

Source Contig U35_13730

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5222_PI390587928	Hv_44K_v2	GCAGTGTTAGAACTTCTTACTATGGTTATGTTATTGTTTGGTTGTGTTGGTAAAACTTCG	1213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249923.1	1686	2e-24	1592 - 1651	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC	MLOC_67137.3	3183	2e-24	3005 - 3064	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
JLOC1	JLOC1_44289.3	1300	8e-25	1019 - 1078	100	60 / 60	plus
JLOC1	JLOC1_44289.2	1496	8e-25	1215 - 1274	100	60 / 60	plus
JLOC1	JLOC1_44289.1	1824	8e-25	1543 - 1602	100	60 / 60	plus
Harvest21	ABC38785	635	3e-25	133 - 192	100	60 / 60	minus
Harvest21	ABC00995	949	3e-25	25 - 84	100	60 / 60	minus	ABC00995
Harvest21	ABC00929	1734	3e-25	1563 - 1622	100	60 / 60	plus	ABC00929
Harvest21	ABC00715	1218	3e-25	1150 - 1209	100	60 / 60	plus
Harvest35	U35_42840	635	3e-25	133 - 192	100	60 / 60	minus
Harvest35	U35_13879	976	3e-25	866 - 925	100	60 / 60	plus
Harvest35	U35_13730	1282	3e-25	1214 - 1273	100	60 / 60	plus
Harvest35	U35_13692	1715	3e-25	1544 - 1603	100	60 / 60	plus
Harvest35	U35_13702	633	4e-24	525 - 582	100	58 / 58	plus

Contig Sequence (1282 bp)

>U35_13730 1282 Hv_44K_v2
CACGAGGCCGCGGCTTCGACTCCATCGCCTCCTCCCTCCCTCCCCCACTCCTCGTCGCCG
GCCAGCCAGGTAGTTAACAGTTCCAGCAGCCATGGGCAAGGAGAAGATCCACATCAGCAT
TGTGGTCATTGGCCATGTCGACTCTGGCAAGTCAACCACGACTGGCCACCTCATCTACAA
GCTTGGTGGCATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCAGCTGAGATGAA
CAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAGAGGGG
TATCACCATCGATATCGCCCTGTGGAAGTTTGAGACCACCAAGTACTCCTGCACTGTCAT
TGATGCTCCTGGTCACCGTGATTTCATCAAGAACATGATCACTGGGACCTCCCAGGCTGA
TTGTGCTGTGCTTATCATTGACTCCACCACTGGTGGTTTTGAGGCTGGTATCTCCAAGGA
TGGCCAGACCCGTGAGCATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAGATGATCTG
CTGCTGCAACAAGATGGACGCCACCACTCCCAAGTACTCGAAGTCCCGTTACGATGAAAT
TGTCAAGGAAGTCTCTTCATACCTGAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTT
CGTCCCCATCTCTGGGTTTGAGGGTGACAACATGATTGAGAGGTCCTCCAACCTTGACTG
GTACAAGGGCCCGACCCTGCTTGAGGCGCTTGACCAGATCAATGAGCCCAAGAGGCCCTC
AGACAAGCCCCTGCGTCTTCCCCTTCAGGATGTGTACAAGATTGGCGGCATTGGAACTGT
GCCAGTGGGACGTGTTGAGACTGGAGTCATCAAGCCAGGCATGGTTGTCACCTTTGGCCC
TACTGGCCTGACCACTGAGGTCAAGTCCGTTGAGATGCACCACGAGTCTCTCCTGGAGGC
GCTTCCTGGTGACAACGTCGGCTTTAACGTCAAGAATGTTGCCGTCAAGGATCTCAAGCG
TGGGTACGTTGCTTCCAACTCCAAGGACGACCCTGCCAAGGCTGCGATCAAGAAGAAATG
AGATGTTTTCAGGCAGTGGCATCGTTGGTGGTTCATTGCTGCATCTATGGTGGTGGCGGT
GGTATACACTGGTGGTTATAGTGGTGTAAGTGGATTTGGAAAACTTGTTGAGCTTCGGAT
TTTTTTGTGTCGAGCAGTGTTAGAACTTCTTACTATGGTTATGTTATTGTTTGGTTGTGT
TGGTAAAACTTCGTCAGTTAAA

Homology of Contig U35_13730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08050.1	448	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi1g06860.8	326
Arabidopsis v10	AT5G60390.1	449	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449