barSeed - Barley Seed Development Database

Probe CUST_5199_PI390587928

Source Contig U35_13745

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5199_PI390587928	Hv_44K_v2	GAGGATGGCAGAATAAGTATATCTTTCCATAAGTCAGAAATATAGAATCGGAATGGAGAT	1775	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49182.1	1022	2e-24	895 - 954	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
JLOC1	JLOC1_31504.1	1010	8e-25	895 - 954	100	60 / 60	plus
Harvest21	ABC00459	1839	3e-25	1763 - 1822	100	60 / 60	plus	ABC00459
Harvest35	U35_13745	1852	3e-25	1776 - 1835	100	60 / 60	plus

Contig Sequence (1852 bp)

>U35_13745 1852 Hv_44K_v2
CAGCCGCCGCAGGCTTTGACCCCATCGCCGCCCCCCCTCCTCTTCGTCTCCGGCCAGCCA
GGTAGTTAACAGCCATGGGCAAGGAAAAGATCCACATCAGCATTGTGGTCATTGGCCATG
TTGACTCTGGCAAGTCAACCACGACTGGCCATCTCATCTACAAGCTTGGAGGCATTGACA
AGCGTGTGATCGAGAGGTTTGAGAAGGAAGCAGCTGAGATGAACAAGAGGTCATTCAAGT
ATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAGAGAGGTATCACCATTGATATTG
CTCTGTGGAAGTTCGAGACCACCAAGTACTCTTGCACTGTCATTGATGCTCCTGGTCACC
GTGATTTCATCAAGAACATGATCACTGGGACCTCCCAGGCTGATTGTGCTGTGCTTATCA
TTGACTCCACCACTGGTGGTTTTGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGC
ATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGG
ACGCCACCACTCCCAAGTACTCGAAGTCCCGTTACGATGAAATTGTCAAGGAAGTCTCTT
CATACCTGAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGT
TTGAGGGTGACAACATGATTGAGAGGTCCTCCAACCTTGACTGGTACAAGGGCCCTACCC
TGCTTGAGGCGCTTGACCAGATCAATGAGCCCAAGAGGCCCTCAGACAAGCCCCTGCGTC
TTCCCCTTCAGGATGTCTACAAGATTGGTGGCATTGGAACTGTGCCAGTGGGACGTGTTG
AGACTGGAGTCATCAAGCCAGGCATGGTTGTCACCTTTGGCCCTACTGGCCTTACCACTG
AGGTCAAGTCTGTTGAGATGCACCATGAGTCTCTCCTGGAGGCGCTTCCTGGTGACAATG
TTGGCTTCAACGTCAAGAACGTGGCTGTCAAGGATCTCAAGCGTGGGTATGTTGCTTCCA
ACTCCAAGGACGACCCTGCCAAGGAGGCTGCCAACTTCACTGCCCAGGTCATCATCATGA
ACCACCCTGGCCAGATCAGCAACGGTTATGCCCCTGTGCTGGACTGCCACACATCCCACA
TCGCCGTCAAGTTTGCCGAGATCCAGACCAAGATCGACAGGCGGTCCGGCAAGGAGCTGG
AGGCGGCGCCCAAGTTCCTCAAGAACGGTGATGCTGGGTTCGTCAAGATGATTCCAACCA
AGCCCATGGTGGTGGAGACCTTTGCCCAGTACCCTCCTCTGGGTCGGTTTGCCGTGCGTG
ACATGAGGCAGACGGTTGCTGTGGGTGTGATCAAGAGCGTGGAGAAGAAGGAGCCGACCG
GCGCCAAGGTTACCAAGGCTGCGATCAAGAAGAAATGAGATGGTGTCAGGTTCTTTACCA
CATCTATGGTGGCGGTGGCGGTGTTTGGTGGTGGCGATAGTTGTTTTAGTCGCTTGGGTT
ATTTGTGTCGAGAAGTGTTTGAACTGCTTAAAGCTCGAGAAGTGTTTGAACTGCTTAAAG
CTCTGGTCATTGTATCGTTCGGTTGTGTTGGTGGAACTTCATCAGTTAATGTTGCTACCA
TATATAAAATCATCATGTTTGGAGTCGTTTTAAAAAAAAAAAAAAAAAAAGGTTTTCTGT
GTTCAAAAAAAAAAAAAAAAAGGTGTTTGTTTTTTTCCAATTCCTGTGCTTCTCGTACAG
CCAGTATTCCCTGGCAGTAAGAGTCCTGCTAGAGCGAGGATGGCAGAATAAGTATATCTT
TCCATAAGTCAGAAATATAGAATCGGAATGGAGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_13745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08050.1	448	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi4g12750.2	448
Arabidopsis v10	AT5G60390.1	449	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449