barSeed - Barley Seed Development Database

Probe CUST_4907_PI390587928

Source Contig U35_21357

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4907_PI390587928	Hv_44K_v2	CCGTATGTTATGGGGGGACAATAAATATTGCTATATGTTAATTCTTGAGGGTACAGACTT	548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354227	894	2e-24	802 - 861	100	60 / 60	plus	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC	AK357637	1380	2e-24	1240 - 1299	100	60 / 60	plus	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
MLOC	MLOC_58959.1	351	2e-24	67 - 126	100	60 / 60	minus	ABC07217 ABC07219 ABC07518 ABC15446 ABC34124 ABC39062
JLOC1	JLOC1_38334.1	353	8e-25	67 - 126	100	60 / 60	minus
Harvest21	ABC15446	631	3e-25	549 - 608	100	60 / 60	plus	ABC15446
Harvest35	U35_21357	631	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_21357 631 Hv_44K_v2
AGCTTTCTTATGGATTAGGCTATTGATGTATATCGAAAGTTACAAATATGCTTTGTTTTT
TTGCTCATTTGTTCTTTCCCTTTAGATTTACCCAGGTTCAGTCATTTATTGTTTGCTTCC
TGTTTCATGTATGTAGTTTGTGTGTTGTGCTAGCTTGATGTTTTCTGTGTATGCTTTTTA
TGGACGATGATTTACTGCAGGTTAGCACTGTCAAAAGGTCATACTTAACGCATGCCTAAT
TTTAACATTAAATCAACTTCATTAATTTTCAGGTATAATACTCTGACGGAGTTACCTTCT
TCAGAGTGCAGAGGAGCAAAATTGTTCTAATCAGCAGCAGCACAGCAGTCACTTGGATCA
GTGGAAGAAGAGCATGAGCAGCACGGGCAGAGGAGCAACAGCAGCTAGTTCTTCAAGTAC
AATGGAAAACAATCAAGCTTATATCTGAAAAATGAGTTAGCTAGGCTCAGAATTTTGAGT
TGGCCTCTTTACATATGCTACCTGAAAAATGAGTTAGCTAGTCATCTAAGTTGAGCTGAT
TTTGATTTCCGTATGTTATGGGGGGACAATAAATATTGCTATATGTTAATTCTTGAGGGT
ACAGACTTGCTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_21357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None