barSeed - Barley Seed Development Database

Probe CUST_4869_PI390587928

Source Contig U35_28166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4869_PI390587928	Hv_44K_v2	TTTCAGGAAATTGCTTGATCTGCCCTCTTTCTTCATGTCCTAGATCTAGCCTACATGTTG	673	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4849.1	1378	2e-24	1066 - 1125	100	60 / 60	plus	ABC00006 ABC00422 ABC00425 ABC00828 ABC00837 ABC00944 ABC00981 ABC01012 ABC26767 ABC26824 ABC26853 ABC53022
JLOC1	JLOC1_3075.1	1186	8e-25	1022 - 1081	100	60 / 60	plus
Harvest21	ABC50261	679	3e-25	18 - 77	100	60 / 60	minus
Harvest21	ABC26879	767	3e-25	674 - 733	100	60 / 60	plus
Harvest21	ABC00638	1045	3e-25	963 - 1022	100	60 / 60	plus
Harvest35	U35_28166	767	3e-25	674 - 733	100	60 / 60	plus

Contig Sequence (767 bp)

>U35_28166 767 Hv_44K_v2
GGGGCAGCCCATGGTACGGTGCCGACCGTGTGCTCTACCTCGGTCCGCTTTCCGGGGAGC
CCCCGAGCTACTTGACCGGTGGGCCATGCTCGGTGCGCTCGGATGCGTCTTCCCCGAGCT
TCTTGCGCGCAATGGAGTCAAGTTCGGTGAGGCTGTATGGTTCAAGGCAGGCTCCCAAAT
CTTCAGCGAGGGTGGCCTCGACTACCTCGGCAACCCTAGCCTCGTGCATGCACAAAGCAT
CCTTGCTATCTGGGCATGTCAAGTCGTGCTCATGGGCGCCGTTGAAGGGTACCGCATTGC
TGGTGGCCCACTCGGTGAGGTGGTTGATCCACTCTACCCTGGCGGCAGCTTCGACCCGCT
CGGCCTAGCCGATGACCCAGAGGCATTCGCGGAGCTCAAGGTAAAAGAGGTCAAGAACGG
GCGCCTTGCCATGTTCTCCATGTTTGGCTTCTTCGTGCAGGCTATTGTCACCGGCAAGGG
CCCCCTCGAGAACCTTGCTGACCATCTCGCCGATCCTGTCAACAACAACGCATGGGCGTT
TGCCACTAACTTTGTTCCCGGCAAGTGAGGGGTTGGCCCTAGTTAGCTGCGAGTTGTAGC
CATTAAGGCGACTACACTGAACTGCACCCGTATTGTGTGGTTTTGTAACATCATGGTGTA
AATTACAAGGATCTTTCAGGAAATTGCTTGATCTGCCCTCTTTCTTCATGTCCTAGATCT
AGCCTACATGTTGNTCCATGAGAAATGAGAACGATTAATACTTGAGC

Homology of Contig U35_28166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	4e-114	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi2g16290.1	264	1e-115
Arabidopsis v10	AT2G34420.1	265	3e-107	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265