barSeed - Barley Seed Development Database

Probe CUST_41296_PI390587928

Source Contig U35_999

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41296_PI390587928	Hv_44K_v2	CAGATACTCAGATCTCAGCAGAAAATCTCTCTAGATTTATGTTTACCTATGGATACATAC	575	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364453	2668	7e-23	805 - 864	98	59 / 60	plus	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
MLOC	AK249100.1	2998	7e-23	740 - 799	98	59 / 60	plus	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
MLOC	AK359307	2615	7e-23	802 - 861	98	59 / 60	plus	ABC03063 ABC03064 ABC03066 ABC03067
MLOC	MLOC_64848.1	182	7e-23	37 - 96	98	59 / 60	minus	None
JLOC1	JLOC1_42618.1	184	4e-23	41 - 100	98	59 / 60	minus
Harvest21	ABC03069	647	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_999	649	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_999 649 Hv_44K_v2
CTCCGCTCCGCCCTCACGCACCTCACCGCGGCCACCTCCTCCCACCCACCGCCGCCGGCG
GCGCCATGCAGGTCGGCGGCGAGGAGTTCGCGGTCGGCGTGGTGATCTCCGCGAAGACCA
CCCTCGGGGAGGAGTTCGAGGGCTAGATCGTCTCCTTCGACCGCCCGAGCAACCTCCTCG
TCATCCAGGAGGGCATGGGCAGGGCGGAGAGGGGCGAGCGGCGGAACGTGAGGGTGCTCA
AGGCCAACTACATCCAGGAGTTCTCCCTCGTCGGCGAGTACGACGACCCGCTCTACCCGG
CTAGCTGTGTGCTCGACCTCGCCGCCATCCACGCCAGGGAGGAGGCCACCCTCAGGTGCG
TCATACTGCATCCCAAACCCTTTTGGTACTACTTTCTAGTCATTGCTAGTTAGGCATCAG
ATGCTTATTTATCTTGTTTGTATTTGAGATGCGGTCAAGATTCAATCAATGGATTTGCTC
ACTCCAGCTGTAGATGCTCTAATATGTTGTGCTTAGTTGAGTCGTAGTACTGGTCAATGT
GCAGCACCAAATTTGTAAGGATCATGCACACTGATCAGATACTCAGATCTCAGCAGAAAA
TCTCTCTAGATTTATGTTTACCTATGGATACATACTAATTCCTCGAGAA

Homology of Contig U35_999 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None