barSeed - Barley Seed Development Database

Probe CUST_4009_PI390587928

Source Contig U35_37347

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4009_PI390587928	Hv_44K_v2	AGAGCGTGAACCTCAAGTACGTCAAGCTGGGGTACCACTACCTCATCACCCACCTCATCA	223	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68976.1	2852	2e-24	372 - 431	100	60 / 60	plus	ABC04206 ABC06409 ABC17547 ABC18311 ABC20877 ABC22130
JLOC1	JLOC1_45686.1	2507	8e-25	406 - 465	100	60 / 60	plus
Harvest35	U35_37347	580	3e-25	224 - 283	100	60 / 60	plus
Harvest35	U35_14218	1242	3e-25	990 - 1049	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_37347 580 Hv_44K_v2
CGCCCCAGCACGCACGCCTCGTCAAACACCAGTAACGCCTCTCCCCTCCACCAGGTCCAC
GCATCGGCCCATCCATCCATCCATCTTTGACTCGTCAGTTCAGATTCCGCATCCAGATCT
AGGCGCCCGATCCGGGGGGCGATGAACGGAGGCATCGCTCCGCCGCCGGCGATGGAGACG
GCGGCGACCACGCCGAGCCACCGGCGGCTGCCGGACTTCCTCCAGAGCGTGAACCTCAAG
TACGTCAAGCTGGGGTACCACTACCTCATCACCCACCTCATCACGCTGCTGCTGCTGCCG
CTCATGGCCGTCATCGTCCTCGAGGCCGGCCGCACCGACCCCGACGACCTCCGCCAGCTC
TGGCTGCATCTCCAGTACAACCTGGTGTCTGTGCTCGTCCTCTCCGCCGTCCTCGTCTTC
GGCGCTACCGTGTACGTGCTCACCCGCCCCCGCCCCGTCTACCTCGTCGACTTCGCCTGC
TACAAGGCGCCCGACCACCTCAAGGTCGGCTTCCAGGAGTTCCTCCGCCACTCTGCGCTC
TGCGGCTTCTCCGACGACGCCCTCGAGTTCCAGCGCAAGA

Homology of Contig U35_37347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49290.3	515	9e-56	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi2g16050.1	519	8e-58
Arabidopsis v10	None