barSeed - Barley Seed Development Database

Probe CUST_40094_PI390587928

Source Contig U35_37645

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40094_PI390587928	Hv_44K_v2	CGAGGAAGAAACACATGTCTTATCTTTCAGTCGGTCGGTCTGTCGTCGGTGATGCAGCAA	682	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354142	908	7e-23	749 - 809	98	60 / 61	plus	ABC00064 ABC00328 ABC00360 ABC00471 ABC00541 ABC17116 ABC37166 ABC46573 ABC53030
MLOC	AK368716	459	7e-23	299 - 359	98	60 / 61	plus	ABC00064 ABC00360 ABC00471 ABC37166 ABC46573 ABC53030
MLOC	MLOC_62076.1	1599	7e-23	1346 - 1406	98	60 / 61	minus	ABC00064 ABC00360 ABC00471 ABC11723 ABC37166 ABC46307 ABC46573 ABC53030
MLOC	MLOC_62076.2	1680	7e-23	1427 - 1487	98	60 / 61	minus	ABC00064 ABC00360 ABC00471 ABC11723 ABC37166 ABC46307 ABC46573 ABC53030
JLOC1	JLOC1_40605.3	1747	4e-23	1494 - 1554	98	60 / 61	minus
JLOC1	JLOC1_40605.2	1599	4e-23	1346 - 1406	98	60 / 61	minus
JLOC1	JLOC1_40605.1	1680	4e-23	1427 - 1487	98	60 / 61	minus
Harvest21	ABC53030	907	1e-23	744 - 804	98	60 / 61	plus	ABC53030
Harvest21	ABC31270	503	1e-23	343 - 403	98	60 / 61	plus
Harvest21	ABC01009	495	1e-23	340 - 400	98	60 / 61	plus
Harvest21	ABC00973	1168	1e-23	860 - 920	98	60 / 61	minus
Harvest21	ABC00471	532	1e-23	364 - 424	98	60 / 61	plus	ABC00471
Harvest21	ABC00116	1004	1e-23	820 - 880	98	60 / 61	plus
Harvest35	U35_37645	742	3e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_31126	503	1e-23	343 - 403	98	60 / 61	plus
Harvest35	U35_13972	495	1e-23	340 - 400	98	60 / 61	plus
Harvest35	U35_13963	1052	1e-23	842 - 902	98	60 / 61	plus
Harvest35	U35_13943	532	1e-23	364 - 424	98	60 / 61	plus

Contig Sequence (742 bp)

>U35_37645 742 Hv_44K_v2
CACGCGTCCGGGTTCGGGTTCGGTTCGGGTCCGAGAGACAGTAGCTAGCCTAGCCTAGGG
TTTTCGTAGGAGAAGGAGAGGAGGAGATCCATGGCGGAGACGGAGTACCGCTGCTTCGTG
GGCGGCCTCGCCTGGGCCACCGACGACCACAACCTCCAGGCCGCCTTCAGCCAGTACGGC
GAGATCCTCGACGCCAAGATCATCAACGACCGTGAGACGGGGAGGTCGCGCGGGTTCGGG
TTCGTGACGTTCGGGAGCGAGGAGTCGATGCGCCAGGCCATCGAGGAGATGAACGGCAAG
GAGCTCGACGGGCGCAGCATCACCGTCAACGAGGCCCAGTCCCGCCGCTCCGGCGGCGGG
GGCGGCGGCGGCGGCGGCTACGGCGGCCAGCGCGGCGGTGGCGGAGGCTACGGCGGCGGT
GGCGGCTACGGCGGCCAGGGAGGCGGCTACGGCGGCCAGGGAGGCGGTGGCTACGGCGGC
CAGGGCGGTGGTGGCTACGGCGGTGGTTACGGCGGTGGTTACGGACCCCGTCTCATCGCC
CAGTTATCCATCCATCCATCTATCGTCTACCGTCTTCGTCAGCAAGTTATCTATCTTCGG
TGTGTCAGTCTGAGTCGTGTTTGTGTGTCTGTCCGGTCCTGTGGTGTNNTTGATCGCGAG
CTCGAGTGGTCTCTGTGTTACGCGAGGAAGAAACACATGTCTTATCTTTCAGTCGGTCGG
TCTGTCGTCGGTGATGCAGCAA

Homology of Contig U35_37645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None