barSeed - Barley Seed Development Database

Probe CUST_40086_PI390587928

Source Contig U35_13692

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40086_PI390587928	Hv_44K_v2	TGTTTGGTTGTGTTGGTAAAACTTCGTCAGTTAAAGTTGCTATAGTCATTTTTGGAGTTC	1577	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67137.3	3183	2e-24	3039 - 3098	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
JLOC1	JLOC1_44289.3	1300	8e-25	1053 - 1112	100	60 / 60	plus
JLOC1	JLOC1_44289.2	1496	8e-25	1249 - 1308	100	60 / 60	plus
JLOC1	JLOC1_44289.1	1824	8e-25	1577 - 1636	100	60 / 60	plus
Harvest21	ABC38785	635	3e-25	99 - 158	100	60 / 60	minus
Harvest21	ABC00929	1734	3e-25	1597 - 1656	100	60 / 60	plus	ABC00929
Harvest35	U35_42840	635	3e-25	99 - 158	100	60 / 60	minus
Harvest35	U35_13692	1715	3e-25	1578 - 1637	100	60 / 60	plus
Harvest35	U35_13879	976	1e-24	900 - 958	100	59 / 59	plus
Harvest35	U35_13702	633	5e-23	559 - 617	98	58 / 59	plus

Contig Sequence (1715 bp)

>U35_13692 1715 Hv_44K_v2
GCCGAGGGTCCCCTCCCGCCGCCGCCTCCCCTCCGTTCGTTCTTCTTCTTCGAGTTTGTT
ATCAGCCATGGGTAAGGAGAAGACTCACATCAACATCGTGGTCATTGGCCACGTCGACTC
TGGCAAGTCGACCACCACTGGCCACTTGATCTACAAGCTTGGTGGCATTGACAAGCGTGT
GATCGAGAGGTTCGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCGTG
GGTGCTTGACAAGCTCAAGGCTGAGCGTGAGAGAGGTATCACCATCGATATTGCCCTCTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCCCCTGGTCACCGTGACTT
CATCAAGAACATGATCACGGGTACCTCCCAGGCTGACTGTGCTGTTCTCATCATTGACTC
CACCACTGGTGGTTTTGAGGCTGGTATCTCCAAGGATGGCCAGACACGCGAGCACGCTCT
CCTTGCTTTCACTCTTGGAGTGAAGCAGATGATCTGCTGCTGCAACAAGATGGACGCCAC
CACTCCCAAGTACTCGAAGGCACGTTATGAAGAAATTGTTAAGGAGGTCTCTTCCTACCT
GAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTGAGGG
TGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGCCCAACCCTGCTTGA
GGCGCTTGACCAGATCAACGAGCCCAAGAGGCCCTCAGACAAGCCCCTGCGTCTTCCCCT
TCAGGATGTGTACAAGATTGGCGGCATTGGAACTGTGCCAGTGGGACGTGTTGAGACTGG
AGTCATCAAGCCAGGCATGGTTGTCACCTTTGGCCCTACTGGCCTGACCACTGAGGTCAA
GTCCGTTGAGATGCACCACGAGTCTCTCCTGGAGGCGCTTCCTGGTGACAACGTCGGCTT
TAACGTCAAGAATGTTGCCGTCAAGGATCTCAAGCGTGGGTACGTTGCTTCCAACTCCAA
GGACGACCCTGCCAAGGAGGCTGCCAACTTCACCGCCCAGGTCATCATCATGAACCACCC
TGGCCAGATCAGCAATGGCTACGCCCCGGTGCTGGACTGCCACACGTCCCACATTGCCGT
CAAGTTTGCTGAGATCCAGACCAAGATCGACAGGCGGTCCGGCAAGGAGCTGGAGGCGGC
GCCCAAGTTCCTCAAGAACGGCGACGCCGGGTTCGTCAAGATGATCCCCACCAAGCCCAT
GGTGGTGGAGACCTTCGCCCAGTACCCTCCCCTGGGCCGTTTTGCCGTGCGTGACATGAG
GCAGACGGTTGCCGTGGGCGTGATCAAGAGCGTGGAGAAGAAGGAGCCGACAGGTGCCAA
GGTGACCAAGGCTGCGATCAAGAAGAAATGAGATGTTTTCAGGCAGTGGCATCGTTGGTG
GTTCATTGCTGCATCTATGGTGGTGGCGGTGGTATACACTGGTGGTTATAGTGGTGTAAG
TGGATTTGGAAAACTTGTTGAGCTTCGGATTTTTTTGTGTCGAGCAGTGTTAGAACTTCT
TACTATGGTTATGTTATTGTTTGGTTGTGTTGGTAAAACTTCGTCAGTTAAAGTTGCTAT
AGTCATTTTTGGAGTTCTTTTAAAAAAAAAAAAAAAAATTTTTTTTTCTTGCAAAGTGGA
ATTGTTTTTTTCGTTGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08050.1	448	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi4g12750.2	448
Arabidopsis v10	AT5G60390.1	449	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449