barSeed - Barley Seed Development Database

Probe CUST_39475_PI390587928

Source Contig U35_13943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39475_PI390587928	Hv_44K_v2	GTTGGTGATCCTATGTTTGAACTCGGTTTGAATCGATGAAGAAAAATGCAAGTCAAAAAA	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354142	908	9e-22	847 - 901	100	55 / 55	plus	ABC00064 ABC00328 ABC00360 ABC00471 ABC00541 ABC17116 ABC37166 ABC46573 ABC53030
MLOC	AK368716	459	9e-22	397 - 451	100	55 / 55	plus	ABC00064 ABC00360 ABC00471 ABC37166 ABC46573 ABC53030
MLOC	MLOC_62076.1	1599	9e-22	1254 - 1308	100	55 / 55	minus	ABC00064 ABC00360 ABC00471 ABC11723 ABC37166 ABC46307 ABC46573 ABC53030
MLOC	MLOC_62076.2	1680	9e-22	1335 - 1389	100	55 / 55	minus	ABC00064 ABC00360 ABC00471 ABC11723 ABC37166 ABC46307 ABC46573 ABC53030
JLOC1	JLOC1_40605.3	1747	5e-22	1402 - 1456	100	55 / 55	minus
JLOC1	JLOC1_40605.2	1599	5e-22	1254 - 1308	100	55 / 55	minus
JLOC1	JLOC1_40605.1	1680	5e-22	1335 - 1389	100	55 / 55	minus
Harvest21	ABC00471	532	3e-25	462 - 521	100	60 / 60	plus	ABC00471
Harvest21	ABC46573	282	2e-22	26 - 80	100	55 / 55	minus	ABC46573
Harvest21	ABC31270	503	2e-22	441 - 495	100	55 / 55	plus
Harvest21	ABC01009	495	2e-22	438 - 492	100	55 / 55	plus
Harvest21	ABC00973	1168	2e-22	768 - 822	100	55 / 55	minus
Harvest21	ABC00116	1004	2e-22	918 - 972	100	55 / 55	plus
Harvest21	ABC37166	175	8e-21	26 - 80	98	54 / 55	minus	ABC37166
Harvest21	ABC00064	770	8e-21	691 - 745	98	54 / 55	plus	ABC00064
Harvest35	U35_13943	532	3e-25	462 - 521	100	60 / 60	plus
Harvest35	U35_31126	503	2e-22	441 - 495	100	55 / 55	plus
Harvest35	U35_13972	495	2e-22	438 - 492	100	55 / 55	plus
Harvest35	U35_13963	1052	2e-22	940 - 994	100	55 / 55	plus

Contig Sequence (532 bp)

>U35_13943 532 Hv_44K_v2
CCGGTTCGGGTTCCTGGTTCGGTTCGGGTTCGGTTCGGTTCGGGTCCGAGAGACAGTAGC
TAGCCTAGCCTAGGGTTTTCGTAGGAGGAGAAGGAGAGGAGGAGATCCATGGCGGAGACG
GAGTACCGCTGCTTCGTGGGCGGCCTCGCCTGGGCCACCGACGACCACAACCTCCAGGCC
GCCTTCAGCCAGTACGGCGAGATCCTCGACGCCAAGATCATCGCCCAGTTATCCATCCAT
CTATCGTCTACCGTCTTCGTCAGCAAGTTATCTATCTTCGGTGTGTCAGTCTGAGTCGTG
TTTGTGTGTCTGTCCGGTCCTGTGGTGTTTTTGATCGCGAGCTCGAGTGGTCTCTGTGTT
ACGCGAGGAAGAAACAACATGTCTTATCTTTCAGTCGGTCGGTCTGTCGTCGGTGATGCA
GCAATCCCTCTTCCTGTCTTGGACTGTAATTGGGATGTGATGTTGGTGATCCTATGTTTG
AACTCGGTTTGAATCGATGAAGAAAAATGCAAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None