- Probe CUST_38443_PI390587928
- Source Contig U35_3177
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38443_PI390587928 | Hv_44K_v2 | TAAAAGACGAGTCAAGAACAGGTGTGCTGCTGTCCTTGGGTGGTTCAATTAATCCAGTCT | 600 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249770.1 | 2323 | 2e-24 | 2241 - 2300 | 100 | 60 / 60 | minus | ABC04823 ABC26033 ABC37753 |
| MLOC | AK353820 | 2303 | 2e-24 | 2124 - 2183 | 100 | 60 / 60 | minus | ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 |
| MLOC | AK360703 | 991 | 2e-24 | 877 - 936 | 100 | 60 / 60 | plus | ABC04820 ABC04823 ABC04824 ABC47351 |
| MLOC | AK372913 | 2156 | 2e-24 | 2095 - 2154 | 100 | 60 / 60 | minus | ABC04823 ABC26033 ABC37753 |
| MLOC | MLOC_64492.1 | 1666 | 2e-24 | 593 - 652 | 100 | 60 / 60 | minus | ABC04820 ABC04823 ABC04824 ABC37753 ABC47351 |
| MLOC | MLOC_64491.1 | 3866 | 2e-24 | 2432 - 2491 | 100 | 60 / 60 | minus | ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351 |
| MLOC | MLOC_64491.2 | 3580 | 2e-24 | 2146 - 2205 | 100 | 60 / 60 | minus | ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351 |
| JLOC1 | JLOC1_42355.1 | 2619 | 8e-25 | 1017 - 1076 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42354.1 | 3674 | 8e-25 | 2241 - 2300 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04824 | 677 | 3e-25 | 18 - 77 | 100 | 60 / 60 | minus | ABC04824 |
| Harvest21 | ABC04823 | 907 | 3e-25 | 58 - 117 | 100 | 60 / 60 | plus | ABC04823 |
| Harvest21 | ABC04820 | 1639 | 3e-25 | 1540 - 1599 | 100 | 60 / 60 | plus | ABC04820 |
| Harvest35 | U35_3178 | 1722 | 3e-25 | 1636 - 1695 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3177 | 666 | 3e-25 | 601 - 660 | 100 | 60 / 60 | plus |
Contig Sequence (666 bp)
>U35_3177 666 Hv_44K_v2 GGTGGCCGGCATTCTGTCAGGGCGATTCCAGCTCCCGTCCGAGGAGGAGATGATGCGAGA CGTGACGGCCTTCTACTCACGTTTGGGCGCTCGCGGATGGCCCCGAAGATACACCCACAG ACTGCGAGATCGCGAGGTGCCGCGAAATTCGTCCGAAATAAGATTGTTTTCGTTGCTGTT CTAGATCGACCCCGGCGAGGTGGGATTTCTCTGTTGACGTTGCTTATGCCTGCAGTTCGA GAACGAGGACTGGCTCGCGGAGCAATGCCGGCGGGACGGGCCCGAGGAGTGGAGGAGGGA GATGTTCGCCGCGGCAATAGAGGTCATGGGAGAACGTCCGGAGACCTACCGGGACGAGTG GGATGGTGGTGACTACGACCATTTGCTGGCCCAAGCAAACCGAGATTTCGCGGCGCATCT TCCCGCCCCTCTTCGGCCTTGATTGATCGTCGTTCCTTCTTGGTCGAAGTGTCGACGAGA GAGACAGTGGAACGGAGGTTGAGGAACCCAGAACGCGAATAGGATTACATAGCGATCAGT AAACACGAAGATGATAAACTGATGAACTCTACTGCTATCCCTTTTGGAGGGCTTTGGTCA TAAAAGACGAGTCAAGAACAGGTGTGCTGCTGTCCTTGGGTGGTTCAATTAATCCAGTCT CTTGTC
Homology of Contig U35_3177 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |