barSeed - Barley Seed Development Database

Probe CUST_3830_PI390587928

Source Contig U35_14349

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3830_PI390587928	Hv_44K_v2	TAAAGGCCCAGTGGTGCAATAGGAACTATCATCAACGAACAACCTCCCTTTTAGTGATGT	1114	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.942	0.787	1.210	0.656	1.302	1.245
Raw	2.687	2.660	7.747	4.860	2.896	4.036

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79176.1	1204	2e-24	40 - 99	100	60 / 60	minus	ABC02112 ABC02113 ABC02115 ABC02118 ABC02119 ABC18641
JLOC1	JLOC1_52756.1	1269	8e-25	1160 - 1219	100	60 / 60	plus
Harvest21	ABC02113	1194	3e-25	1100 - 1159	100	60 / 60	plus	ABC02113
Harvest35	U35_14349	1226	3e-25	1115 - 1174	100	60 / 60	plus

Contig Sequence (1226 bp)

>U35_14349 1226 Hv_44K_v2
ATTGCATAAGTGTCTCGATCGACACCGTCAACAATTAAGTGACGTTGCATTTGAGCTAGC
TAGCCATGACCTCTTCGTCCCTATCAGTTGTGTTGCTCTTGTGCCTGGTCGTGGCGGCGT
CGGCGCAGCTGTCGCCGACGTTCTACCAAACGACGTGCCCGAACGCTCTGTCCACCATCA
AGGCCGGCGTGACGGCCGCCGTGAACAAGGAGAACCGCATGGGCGCGTCGCTGCTCCGGC
TGCACTTCCACGACTGCTTCGTCCAAGGTTGTGACGCGTCTGTTCTGCTGTCTGGCATGG
AACAAAACGCGGCGCCGAACGTCATGTCCCTGCGAGGCTTCGAAGTCATAGACAGCATCA
AGGCGAAGCTCGAGACCATGTGCAAGCAGACCGTCTCCTGCGCCGACATCCTCACCGTCG
CTGCCCGCGATTCCGTCGTCGCCTTGGGAGGGCCTTCGTGGACGGTTCCTCTTGGGAGGA
GGGACTCCACCAATGCAAACGAAGCAGCGGCGAACTCCGATCTACCTCCCCCGTTCTTCG
ACCTCGTCAACCTCACCCAATCCTTCGGCGACAAGGGCTTCACCGTCACCGACATGGTCG
CCCTCTCCGGCGCCCACACCATCGGGCAAGCCCAGTGCCTAAACTTCCGCGACAGGCTCT
ACAACGAGACCAACATCGACTCCGGCCTCGCGGCGTCGCTCAAGGCCAATTGCCCCCGGC
CGACCGGCTCAGGCGACGGCAATCTGGCCAATCTGGACGTGTCGACCCCTTACTCGTTCG
ACAACGCCTACTACAGCAACCTCAAGTCTCAGAAGGGACTCCTACACTCCGACCAGGTTC
TTTTCACGGGCACCGGCGGCGGCACCGACAACAACGTCAACAACTTCGCAAGTAATCCAG
CGGCGTTCAGCAGCGCCTTCGCCTTGGCCATGGTGAAGATGGGGAACCTTAGCCCGTTGA
CCGGTTCGCAGGGCCAGGTCAGGATCAGCTGCTCGAAGGTGAATTAATCGGCAAAAATGG
TAATATACGTGGGATTAACAAGGCGATCAACGGCCATTATAGCGCTTTCTTGGACCTTAA
GCATGTGTCATATGTATGTCAATGTGCAAAGCCATAAAGGCCCAGTGGTGCAATAGGAAC
TATCATCAACGAACAACCTCCCTTTTAGTGATGTAAAAAAAAAAAAAAAAATAAGAACAG
GGGCGAGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48010.1	316	2e-139	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g17870.1	316	5e-153
Arabidopsis v10	AT5G05340.1	324	3e-105	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324