- Probe CUST_38217_PI390587928
- Source Contig U35_14164
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38217_PI390587928 | Hv_44K_v2 | TTCGGCTGGCCTACCGGTTACCGTTTTCTCCTATTCAAAGACTGTAATATCTATTGCTAC | 551 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74533.1 | 1770 | 2e-24 | 97 - 156 | 100 | 60 / 60 | minus | ABC01389 ABC01390 ABC01393 ABC01394 ABC01397 ABC47406 |
| JLOC1 | JLOC1_49670.1 | 1992 | 8e-25 | 1627 - 1686 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01397 | 1583 | 3e-25 | 1337 - 1396 | 100 | 60 / 60 | plus | ABC01397 |
| Harvest35 | U35_14175 | 1681 | 3e-25 | 1346 - 1405 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14164 | 611 | 3e-25 | 552 - 611 | 100 | 60 / 60 | plus |
Contig Sequence (611 bp)
>U35_14164 611 Hv_44K_v2 TGGAGAAGCAGCCATACCTTGAGCAGTCCCAAGTGGATAAGAAACGCTATGCAGAGGAGA CTGCTGCTTACCGCGGTGCTGGTGCAGCTCCTGTAGACGTGGACTCTGCAGATGGATCGT CCGATTGAATTGGAAGATTGGCCGGTTGCCGAAAGGAACATACTTTCGAGTCATGGTACA AGTAGACATCCGATCTATCTTGGCTGTAGTAACTTGGGAGGTGTGATCCTTACGTTTCTG AGTTAACAAAGAACAGTTAATGGATATGTGTAGGTTTCCAAGGTACTGTTGCTTTGCTAC TAACTGTCAGCACCCGCGACAGGTGTTTTATTCGCTCCCTGGTTGAGCGGCCGCTGGCAT CTCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCTGAGTACGACGAGTCTGGCCCAT CCATCGTGCGCAGGAAATGCTTCTAATTCTTCGGACCCAAGAATGAAAGCCAGGAGGAGC CTTTATCGCGATCCTCCTGCCGCTTCGCCTCCCTCTTTTGTTGCTGTTTCTTCGTTAGCG TGGACAAAGTTTTCGGCTGGCCTACCGGTTACCGTTTTCTCCTATTCAAAGACTGTAATA TCTATTGCTAC
Homology of Contig U35_14164 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |