barSeed - Barley Seed Development Database

Probe CUST_38212_PI390587928

Source Contig U35_14169

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38212_PI390587928	Hv_44K_v2	ATCGATGTGTAATAATAACCGTGGCTTCCTGCGAGCTTCTGCTGTAGGTAGAAAATGGCT	230	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74533.1	1770	2e-24	1390 - 1449	100	60 / 60	minus	ABC01389 ABC01390 ABC01393 ABC01394 ABC01397 ABC47406
JLOC1	JLOC1_49670.1	1992	8e-25	334 - 393	100	60 / 60	plus
Harvest21	ABC01392	425	3e-25	231 - 290	100	60 / 60	plus
Harvest35	U35_14169	427	3e-25	231 - 290	100	60 / 60	plus

Contig Sequence (427 bp)

>U35_14169 427 Hv_44K_v2
CGATCCGCGCCGCGGTGCCAGAGAACCATGCTCTCTCTGTTCCCTTATTAACTGTTCTTG
TCGCTAAGCCTCGCGGTTAACATGCCAGCCATTGCGGTTAGGGGTTCCTCGTGAACTGAT
TGATAGTACTACTCATCATGTTTCTTCGAAGGAGAAAAATAATAATCTCTGCATTTATTT
AGCCAGCGTCCTTCACTGCTAGGATGCGTAGATTCTCCTTTGATCGACCGATCGATGTGT
AATAATAACCGTGGCTTCCTGCGAGCTTCTGCTGTAGGTAGAAAATGGCTGACGCCGAGG
ACATCCAGCCCCTCGTCTGCGACAATGGTACCGGTATGGTCAAGGCTGGGTTCGCTGGAG
ATGATGCTCCCAGGGCTGTCTTCCCCAGTATCGTGGGCCGCCCACGCCACACCGGTGTCA
TGGTCGG

Homology of Contig U35_14169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None