barSeed - Barley Seed Development Database

Probe CUST_35760_PI390587928

Source Contig U35_407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35760_PI390587928	Hv_44K_v2	CCTCTTTCTTCATGTCCTAGATCTAGCCTACATGTTGTTCCATAGAAATAGAACGATTAA	989	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4849.1	1378	9e-22	1089 - 1150	97	60 / 62	plus	ABC00006 ABC00422 ABC00425 ABC00828 ABC00837 ABC00944 ABC00981 ABC01012 ABC26767 ABC26824 ABC26853 ABC53022
JLOC1	JLOC1_3075.1	1186	5e-22	1045 - 1106	97	60 / 62	plus
Harvest21	ABC00638	1045	3e-25	986 - 1045	100	60 / 60	plus
Harvest21	ABC26879	767	2e-21	697 - 758	95	59 / 62	plus
Harvest35	U35_407	1049	3e-25	990 - 1049	100	60 / 60	plus
Harvest35	U35_28166	767	2e-21	697 - 758	95	59 / 62	plus

Contig Sequence (1049 bp)

>U35_407 1049 Hv_44K_v2
CGCTTCAGTGTTCACTATTTGGAGAACACACGACACACCTCTAGCCTTAGGAGCGCAATG
GCGACTACCACCATGTCCCTCTCCTCGGCCTTCGCCGGCAAGTCGGTGAAGAACGTGGCT
TCCTCAGCTCTCTTTGGTGAGGCCCGCGTCACTATGCGGAAGACCGCTGCAAAGGCCAAG
CAAGTTTCATCGGGCAGCCCATGGTACGGTGCCGACCGTGTGCTCTACCTCGGTCCGCTT
TCCGGGGAGCCCCCGAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACC
GCCGGGCTCTCGGCTGACCCCGAGACCTTTGCAAAGAACCGGGAGCTTGAGGTGATCCAC
TGCAGGTGGGCCATGCTCGGTGCGCTCGGATGCGTCTTCCCCGAGCTTCTTGCGCGCAAT
GGAGTCAAGTTCGGTGAGGCTGTATGGTTCAAGGCAGGCTCCCAAATCTTCAGCGAGGGT
GGCCTCGACTACCTCGGCAACCCTAGCCTCGTGCATGCACAAAGCATCCTTGCTATCTGG
GCATGTCAAGTCGTGCTCATGGGCGCCGTTGAAGGGTACCGCATTGCTGGTGGCCCACTC
GGTGAGGTGGTTGATCCACTCTACCCTGGCGGCAGCTTCGACCCGCTCGGCCTAGCCGAT
GACCCAGAGGCATTCGCGGAGCTCAAGGTAAAAGAGGTCAAGAACGGGCGCCTTGCCATG
TTCTCCATGTTTGGCTTCTTCGTGCAGGCTATTGTCACCGGCAAGGGCCCCCTCGAGAAC
CTTGCTGACCATCTCGCCGATCCTGTCAACAACAACGCATGGGCGTTTGCCACTAACTTT
GTTCCCGGCAAGTGAGGGGTTGGCCCTAGTTAGCTGCGAGTTGTAGCCATTAAGGCGACT
ACACTGAACTGCACCCGTATTGTGTGGTTTTGTAACATCATGGTGTAAATTACAAGGATC
TTTCAGGAAATAAAAAAAAAAAAATCTGCCCTCTTTCTTCATGTCCTAGATCTAGCCTAC
ATGTTGTTCCATAGAAATAGAACGATTAA

Homology of Contig U35_407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	7e-172	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	4e-180
Arabidopsis v10	AT2G34420.1	265	7e-160	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265