barSeed - Barley Seed Development Database

Probe CUST_35249_PI390587928

Source Contig U35_9650

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35249_PI390587928	Hv_44K_v2	TGTGTAGAGGAGTCGATGGATGATGTATTGTAATTCATGTGATGTGCTACTGAAATGAAA	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370687	543	7e-23	461 - 520	98	59 / 60	plus	ABC08513 ABC13191 ABC18776 ABC21257 ABC21343 ABC30713
MLOC	AK375894	999	7e-23	929 - 988	98	59 / 60	plus	ABC05377 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC47321
MLOC	AK251926.1	1428	7e-23	1324 - 1383	98	59 / 60	plus	ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC46208 ABC47321
MLOC	AK249443.1	720	7e-23	643 - 702	98	59 / 60	plus	ABC01494 ABC13191 ABC16434 ABC18776 ABC21257 ABC38369
MLOC	AK373908	607	7e-23	525 - 584	98	59 / 60	plus	ABC01494 ABC13191 ABC16434 ABC18776 ABC21257 ABC38369
MLOC	AK359875	1896	3e-21	1812 - 1871	97	58 / 60	plus	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC24067 ABC30713 ABC40626 ABC46208
MLOC	AK372300	1091	3e-21	1008 - 1067	97	58 / 60	plus	ABC01494 ABC01497
MLOC	MLOC_75318.1	399	3e-21	339 - 398	97	58 / 60	plus	ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC47321
JLOC1	JLOC1_21884.1	507	8e-25	315 - 374	100	60 / 60	plus
JLOC1	JLOC1_53699.2	669	4e-23	566 - 625	98	59 / 60	plus
JLOC1	JLOC1_53699.1	646	4e-23	543 - 602	98	59 / 60	plus
JLOC1	JLOC1_27294.1	299	4e-23	222 - 281	98	59 / 60	plus
JLOC1	JLOC1_27184.1	227	4e-23	164 - 223	98	59 / 60	plus
JLOC1	JLOC1_690.2	1098	4e-23	1017 - 1076	98	59 / 60	plus
JLOC1	JLOC1_690.1	1076	4e-23	995 - 1054	98	59 / 60	plus
JLOC1	JLOC1_266.8	878	4e-23	807 - 866	98	59 / 60	plus
JLOC1	JLOC1_266.7	1775	4e-23	1704 - 1763	98	59 / 60	plus
JLOC1	JLOC1_266.6	1789	4e-23	1718 - 1777	98	59 / 60	plus
JLOC1	JLOC1_266.5	1538	4e-23	1467 - 1526	98	59 / 60	plus
JLOC1	JLOC1_266.4	865	4e-23	794 - 853	98	59 / 60	plus
JLOC1	JLOC1_266.3	1771	4e-23	1700 - 1759	98	59 / 60	plus
JLOC1	JLOC1_266.2	2452	4e-23	2381 - 2440	98	59 / 60	plus
JLOC1	JLOC1_266.1	862	4e-23	791 - 850	98	59 / 60	plus
JLOC1	JLOC1_35392.1	316	2e-21	120 - 179	97	58 / 60	minus
JLOC1	JLOC1_31969.4	964	2e-21	905 - 964	97	58 / 60	plus
JLOC1	JLOC1_31969.3	657	2e-21	598 - 657	97	58 / 60	plus
JLOC1	JLOC1_31969.2	812	2e-21	753 - 812	97	58 / 60	plus
JLOC1	JLOC1_31969.1	839	2e-21	780 - 839	97	58 / 60	plus
Harvest21	ABC18776	612	3e-25	519 - 578	100	60 / 60	plus	ABC18776
Harvest21	ABC38369	557	1e-23	29 - 88	98	59 / 60	minus	ABC38369
Harvest21	ABC21257	541	1e-23	434 - 493	98	59 / 60	plus	ABC21257
Harvest21	ABC16434	1223	1e-23	1121 - 1180	98	59 / 60	plus	ABC16434
Harvest21	ABC10947	855	1e-23	756 - 815	98	59 / 60	plus	ABC10947
Harvest21	ABC08514	546	1e-23	447 - 506	98	59 / 60	plus
Harvest21	ABC08513	581	1e-23	482 - 541	98	59 / 60	plus	ABC08513
Harvest21	ABC47321	324	6e-22	36 - 95	97	58 / 60	minus	ABC47321
Harvest21	ABC30713	571	6e-22	488 - 547	97	58 / 60	plus	ABC30713
Harvest21	ABC27008	527	6e-22	424 - 483	97	58 / 60	plus	ABC27008
Harvest21	ABC05377	1622	6e-22	1543 - 1602	97	58 / 60	plus	ABC05377
Harvest35	U35_9650	612	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_42607	557	1e-23	29 - 88	98	59 / 60	minus
Harvest35	U35_19225	910	1e-23	803 - 862	98	59 / 60	plus
Harvest35	U35_17604	581	1e-23	482 - 541	98	59 / 60	plus
Harvest35	U35_17603	596	1e-23	496 - 555	98	59 / 60	plus
Harvest35	U35_7855	1223	1e-23	1121 - 1180	98	59 / 60	plus
Harvest35	U35_1938	2212	1e-23	2113 - 2172	98	59 / 60	plus
Harvest35	U35_46780	324	6e-22	36 - 95	97	58 / 60	minus
Harvest35	U35_38796	674	6e-22	48 - 108	97	59 / 61	minus
Harvest35	U35_28248	527	6e-22	424 - 483	97	58 / 60	plus
Harvest35	U35_15013	1623	6e-22	1543 - 1602	97	58 / 60	plus

Contig Sequence (612 bp)

>U35_9650 612 Hv_44K_v2
TGACACCATAAAGATGTATGTAGCCTCACCAATGCTACTGATTTTTGTCCTGAACAAATT
GATTGTTGATTTCTAGTAGTATCTATGTAATAGAATATGAGAGAAATTATATTTACATAG
CGTTGACACCTTAATCTTGCATCTATGTAACAGAAGATGAGAGAATTATATAACTTTTAC
GCTTAATACACTACCACTGTTAGAGATGAAATAGTTCTAATTTATTTATTACTTGTACAT
TATAATATTTGATTATTTTGTATGCTTTCTTATGTTTGATTATTTGAATTACCAGGATGA
TCTGAAGAACCTAGAAGAAGTAGAGGACAGGACACGAGGAGGGAACAAGAAGCTTCGTTT
ATCATTAATGTTATGTGCGATCAACAAAAACTTGTGCTTCTCATCCAATCTTTGTCGAAC
TATGTTGATGTGTGATTATGCACTTGTTGGGCCCTATTGCTGTACACCTGCATTTCTAGA
ACTATTTCGTTGTGCACTTGTTGGGCCTTGAACCTTGATGTGTAGAGGAGTCGATGGATG
ATGTATTGTAATTCATGTGATGTGCTACTGAAATGAAATATATACAACTAATGTGTAGTA
AAAAAAAAAAAA

Homology of Contig U35_9650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None