- Probe CUST_34614_PI390587928
- Source Contig U35_13879
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34614_PI390587928 | Hv_44K_v2 | GCAGTGTTAGAACTTCTTACTATGGTTATGTTATTGTTTGGTTGTGTTGGTAAAACTTCG | 865 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249923.1 | 1686 | 2e-24 | 1592 - 1651 | 100 | 60 / 60 | plus | ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 |
| MLOC | MLOC_67137.3 | 3183 | 2e-24 | 3005 - 3064 | 100 | 60 / 60 | plus | ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995 |
| JLOC1 | JLOC1_44289.3 | 1300 | 8e-25 | 1019 - 1078 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44289.2 | 1496 | 8e-25 | 1215 - 1274 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44289.1 | 1824 | 8e-25 | 1543 - 1602 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38785 | 635 | 3e-25 | 133 - 192 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00995 | 949 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus | ABC00995 |
| Harvest21 | ABC00929 | 1734 | 3e-25 | 1563 - 1622 | 100 | 60 / 60 | plus | ABC00929 |
| Harvest21 | ABC00715 | 1218 | 3e-25 | 1150 - 1209 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42840 | 635 | 3e-25 | 133 - 192 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_13879 | 976 | 3e-25 | 866 - 925 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13730 | 1282 | 3e-25 | 1214 - 1273 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13692 | 1715 | 3e-25 | 1544 - 1603 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13702 | 633 | 4e-24 | 525 - 582 | 100 | 58 / 58 | plus |
Contig Sequence (976 bp)
>U35_13879 976 Hv_44K_v2 CTCCAACCTTGNACTGGTACAAGGGCCCGACCCTGCTTGAGGCGCTGGACCAGATCAATG AGCCAAAGAGGCCCTCAGACAAGCCCCTGCGTCTTCCCCTTCAGGATGTCTACAAGATTG GCGGCATTGGAACTGTGCCAGTGGGACGTGTTGAGACTGGAGTCATCAAGCCAGGCATGG TTGTTACCTTTGGTCCTACTGGCCTGACCACTGAGGTCAAGTCTGTGGAGATGCACCACG AGTCTCTCCTGGAGGCGCTTCCTGGTGACAACGTCGGCTTCAACGTCAAGAACGTCGCCG TGAAGGATCTCAAGCGTGGGTACGTGGCCTCCAACTCCAAGGATGATCCCGCCAAGGAGG CTGCCAATTTCACTGCCCAGGTCATCATCATGAACCACCCTGGCCAGATCAGCAATGGCT ATGCCCCAGTGCTGGACTGCCACACGTCCCACATTGCCGTCAAGTTCGCTGAGATCCAGA CCAAGATCGACCGGCGGTCTGGCAAGGAGCTGGAAGCGGCGCCCAAGTTCCTCAAGAATG GTGACGCCGGGTTCGTCAAGATGATCCCCACCAAGCCGATGGTGGTGGAGACCTTCGCCC AGTACCCTCCCCTGGGCCGCTTTGCCGTGCGTGACATGAGGCAGACGGTTGCCGTGGGCG TGATCAAGAGCGTGGAGAAGAAGGAGCCGACCGGTGCCAAGGTGACCAAGGCTGCTATCA AGAAGAAATGAGATGTTTTCAGGCAGTGGTGTCGTTGGCGGTTCATTGCTGCATCGATGG TGGTGGCGGTGGGTATACACTGGTGGTTATAGTCGTGTAAGTGGATTTGGAAAACTTGTT GAGCTTTGGATTTTTTTTGTGTCGAGCAGTGTTAGAACTTCTTACTATGGTTATGTTATT GTTTGGTTGTGTTGGTAAAACTTCGTCAGTTAAAGTTGCTATAGTCATTTTTGGAGTTAA AAAAAAAAAAAAAAAA
Homology of Contig U35_13879 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g08050.1 | 448 | 8e-150 | protein|elongation factor Tu, putative, expressed |
| Brachypodium v1_2 | Bradi4g12750.2 | 448 | 4e-151 | |
| Arabidopsis v10 | AT5G60390.1 | 449 | 1e-149 | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449 |