barSeed - Barley Seed Development Database

Probe CUST_32915_PI390587928

Source Contig U35_13140

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32915_PI390587928	Hv_44K_v2	ATATGCCCTTGTGACATTTAACCTTTGTGCCCTTTAATTTCTTTACATGCCCTTATGATG	562	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363837	4543	7e-23	1120 - 1179	98	59 / 60	plus	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC	MLOC_67304.1	298	7e-23	17 - 76	98	59 / 60	plus	None
MLOC	MLOC_42273.1	350	7e-23	230 - 289	98	59 / 60	minus	None
MLOC	MLOC_26884.1	364	7e-23	223 - 282	98	59 / 60	minus	None
MLOC	MLOC_26342.1	273	7e-23	107 - 166	98	59 / 60	plus	None
MLOC	MLOC_783.1	216	7e-23	137 - 196	98	59 / 60	plus	None
JLOC1	JLOC1_18216.1	366	4e-23	224 - 283	98	59 / 60	minus
JLOC1	JLOC1_478.1	213	4e-23	136 - 195	98	59 / 60	plus
Harvest21	ABC26025	655	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_13140	655	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_13140 655 Hv_44K_v2
CCCTCCCCTTCTCCTGCTCTCCCTCCCAGCGGCGGCCGCCTCATCGGCGGCGAGCCTCGT
CGGATGCGCTCCTCGACGGCTTCGGGTACCTCCCCGCGCGGCCCTTGGGCCAAGAAGGAC
ACCATCGACAAGGTGTGCGGGATCGTCAAGAAGGAGCTGGTCGTCGCCCAAGACACCCTC
GTCAACGGGGACACAAAGTTCGCCGACCTCGGCGCAGATTCCCTCGACACGATGCCAACC
TTGTCGGCCAGTGGACTGAAGGCTGCATAGATGCATGTCCAAAATAGCATCTGAGCTGAG
GCTCGATAAGGTGTCGCTTTGGTTGGTTCTGTCTCGCTCGAATCGCCTTGGCCTGTTAAA
AAGCGCTCCACAGCGCCTCCAAACTCCAAGCCTCCAACGTACACGACCCTCAGCATCCGA
TCGACCAACGACGGTGGTTCGGTTACTACAGTGTCACAGACTAGTCGTGCTACCTTCTAA
GTGGTTACTAATTGTAGTAAGTTTACTGAACATCCAAACAAGTACCCTGTTAAAGGCCAC
GAAATGTAAAAGTCAAGCAGCTATATGCCCTTGTGACATTTAACCTTTGTGCCCTTTAAT
TTCTTTACATGCCCTTATGATGTTTACTTTATTTTCCATGTAATTCTCTAAATAT

Homology of Contig U35_13140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None