barSeed - Barley Seed Development Database

Probe CUST_3243_PI390587928

Source Contig U35_22919

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3243_PI390587928	Hv_44K_v2	TGTTTTAAGCGATGTCATATGAAAGTCATTGTCAATCAAGTTGACCTGTCCCATCCTGAT	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249678.1	1547	2e-24	1079 - 1138	100	60 / 60	plus	ABC03677 ABC06191 ABC13360 ABC17513 ABC21924 ABC24067 ABC34989 ABC49897
Harvest21	ABC17513	799	3e-25	336 - 395	100	60 / 60	plus	ABC17513
Harvest35	U35_22919	799	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (799 bp)

>U35_22919 799 Hv_44K_v2
GAGCATACAACTAGGGGTGGTGCAGAAACATAGATAGTTAGCTGAGTTAGCATTTACGTT
ATTACTGTATAGTCCTTATCTATTATGTTTATGGCAATCATGATGTTTCCTAAGTATTTA
TAATCCTTCTTTTATTCAGTTTTATTGATATACTACATGAAGCTCCCCTGTATGGTCACT
GAGAGCCCAGGAGCATAGTTAGTGGCACCTTGTATTGTATAATAGTGGTCCCCATAAAGC
TTTGTAGTATATTGAGTTTGTCCAATAGCCTCAAATGTGTTTTACCAGGTGTTTGTTCAC
AGTATAAGATTGCCAAAAAATAGCATGGTTGGTGATGTTTTAAGCGATGTCATATGAAAG
TCATTGTCAATCAAGTTGACCTGTCCCATCCTGATGCTGAACTTAGATTGCTTGAAGTAT
TCTACCACAAAATATACAAGATTTTTGCACCCACTGAAAAGATAGAAAACATCAACGATC
AGTACTGGACACTACGTGCAGAGGAGGCGTCAATGGCAAGAGTGGCATATTGTACAGTGG
AAGAGGATGAGAAGAAACTTGTGCTTCTCATTCAAACTTTCTCTATCTCTCTTTATGTGT
GATTGTGTACTTGTTGGGTCCTTCTTTTGTACATTTGCACTTGCAGAAGTATTATGTTGT
GCACTTGTAAAATTATTTTGATGTGCACTTGTTAGGCCTTGAACCTTAATGTGTGGAGGA
GTCGGTGGATGATATATTGTATTTCATCTGATGTGCTACTGAAATGAAATATACAGTTTA
TCTTCAAAAAAAAAAAAAA

Homology of Contig U35_22919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None