barSeed - Barley Seed Development Database

Probe CUST_32027_PI390587928

Source Contig U35_42840

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32027_PI390587928	Hv_44K_v2	CTTCGTCAGTTAAAGTTGCTATAGTCATTTTTGGAGTTCTTTTATATCTGTTGCCTCATG	77	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67137.3	3183	2e-24	3060 - 3119	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
JLOC1	JLOC1_44289.3	1300	8e-25	1074 - 1133	100	60 / 60	plus
JLOC1	JLOC1_44289.2	1496	8e-25	1270 - 1329	100	60 / 60	plus
JLOC1	JLOC1_44289.1	1824	8e-25	1598 - 1657	100	60 / 60	plus
Harvest21	ABC38785	635	3e-25	78 - 137	100	60 / 60	minus
Harvest21	ABC00929	1734	3e-25	1618 - 1677	100	60 / 60	plus	ABC00929
Harvest35	U35_42840	635	3e-25	78 - 137	100	60 / 60	minus

Contig Sequence (635 bp)

>U35_42840 635 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACTGTAAACTAAATACGTTACCAACGAAAAAAACAATTCCAC
TTTGCAAGAAAAAAAAACATGAGGCAACAGATATAAAAGAACTCCAAAAATGACTATAGC
AACTTTAACTGACGAAGTTTTACCAACACAACCAAACAATAACATAACCATAGTAAGAAG
TTCTAACACTGCTCGACACAAAAAAATCCGAAGCTCAACAAGTTTTCCAAATCCACTTAC
ACCACTATAACCACCAGTGTATACCACCGCCACCACCATAGATGCAGCAATGAACCACCA
ACGATGCCACTGCCTGAAAACATCTCATTTCTTCTTGATCGCAGCCTTGGTCACCTTGGC
ACCTGTCGGCTCCTTCTTCTCCACGCTCTTGATCACGCCCACGGCAACCGTCTGCCTCAT
GTCACGCACGGCAAAACGGCCCAGGGGAGGGTACTGGGCGAAGGTCTCCACCACCATGGG
CTTGGTGGGGATCATCTTGACGAACCCGGCGTCGCCGTTCTTGAGGAACTTGGGCGCCGC
CTCCAGCTCCTTGCCGGACCGCCTGTCGATCTTGGTCTGGATCTCAGCAAACTTGACGGC
AATGTGGGACGTGTGGCAGTCCAGCACCGGGGCGT

Homology of Contig U35_42840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None