barSeed - Barley Seed Development Database

Probe CUST_31727_PI390587928

Source Contig U35_44914

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31727_PI390587928	Hv_44K_v2	TACGCTCATCAATTTTATTCTCACACAGTAGTGCTAGCAGTAGTCGCATCGCTAGCATGC	233	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64491.1	3866	2e-24	1035 - 1094	100	60 / 60	plus	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
Harvest21	ABC43171	372	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_44914	372	3e-25	234 - 293	100	60 / 60	plus

Contig Sequence (372 bp)

>U35_44914 372 Hv_44K_v2
GCAATGTGGAGGTCATCTCTCACAGGGTCTTCGAGGCTGTCCCACCGCTCAGATACCTCC
TCTACACCCCGACGTATCTGAGCCTGCACCACAGGGAGAAGGACTCCAACTTCTGCCTCT
TCATGCCTCTCTTCGACCTCCTGGGCGGTACCCTAAACTCCAAGTCATGGGAGCTGCAGA
AGGAGATCTACCAAGGTACGCAATTAACAATCACCCAAGGAGGCCGAGGACCCTACGCTC
ATCAATTTTATTCTCACACAGTAGTGCTAGCAGTAGTCGCATCGCTAGCATGCGCACCGC
AGGACGATCGAGTACGAACGAGCCGGAGCAACATTGATTGACGAGGCATGCATAGTTGCA
TACATGTGTTGC

Homology of Contig U35_44914 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None