barSeed - Barley Seed Development Database

Probe CUST_30297_PI390587928

Source Contig U35_11047

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30297_PI390587928	Hv_44K_v2	TCCGTCACAACCAATTGATCAACACAAACATCCTGCAATGGCTGAACTGCAGCACTGATT	534	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371872	1144	2e-24	268 - 327	100	60 / 60	plus	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC49982
MLOC	MLOC_33247.1	689	2e-24	362 - 421	100	60 / 60	plus	None
MLOC	AK361403	1405	7e-23	620 - 679	98	59 / 60	plus	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC49982
MLOC	MLOC_3139.1	562	3e-21	193 - 252	97	58 / 60	minus	None
JLOC1	JLOC1_21561.1	138	8e-25	52 - 111	100	60 / 60	plus
Harvest21	ABC25279	809	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_11047	809	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (809 bp)

>U35_11047 809 Hv_44K_v2
GCCCTTTTGGTCGCGATTCGTCAACGTCTTCCCCCTTTGGTTCCCCAAGGTGTTTGACGA
GGAGAAGGGCGCCGGCAAGACGAGAGCTGTGGTGCATGCATGATGCATCTATGTAGTTAA
GGACACAAATCAGTTTGATGTTGGGACCGTCGTCGCAAGGTTTTTTGCTGTAGGGGCAGC
TGTTGCCGAGCACGCTTCGAGGGCATCTGCGCATCTAGCTTGCTCACACCATTCTCTTCT
CAACCCTGGACTGCAATTGTGTTTCCCTGTGTTCTGCGTGTGTTGCGAGCTTTGAGCATT
CCAACAGCAGAGCTGTGGCCGCTGCTGTTTGAAGGAGAAGGTTTCCAGCTAACTCCAGGA
CCAGTACAAGATATGAGGCGTGTGACGGCATCCCTTGGTCCTGATCTCTGAAGTTTGGTC
GCTTGGGAGAACACCATGTATGCTCTTTTGGTGTTTGGTGTTGAGGTTGAGGTTCACTGT
CTTAGATTTCACTGCTGTTTTGGTCCTGCTTGCCGCCAACAACACCAGCTTCTATCCGTC
ACAACCAATTGATCAACACAAACATCCTGCAATGGCTGAACTGCAGCACTGATTCCCCGC
CATTCCACATCTGAACTGCAGCTCTGATTGCATGTGTTCTCCGGCCCCTTCTCTAGGTTC
AGCACCAAGGATCTTGCGGTGGGGTGTGCTAAGCTGTGATCTCTGATCAGTTCGATGGCA
GAGCTGGTGTGCGCGTGCTTCCTGCCGTGGATGGATGCAGAGCTCGTGGTCAGCATATGC
CTGGGGCGAGCGTTCGTCGGATGCCTGTT

Homology of Contig U35_11047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None