barSeed - Barley Seed Development Database

Probe CUST_29792_PI390587928

Source Contig U35_23891

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29792_PI390587928	Hv_44K_v2	GAATGAGCAAGATCCTAGCATTCTTCGCTTTCTATTGGCTTCCGGTGAAGATGTGTCTAG	678	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360309	2043	2e-24	1095 - 1154	100	60 / 60	plus	ABC02360 ABC14804 ABC25340 ABC40037
Harvest21	ABC19520	863	3e-25	679 - 738	100	60 / 60	plus
Harvest35	U35_23891	863	3e-25	679 - 738	100	60 / 60	plus

Contig Sequence (863 bp)

>U35_23891 863 Hv_44K_v2
GGGCGGGGTCGCTGGCGGCCGGGGACGCCATCTTCTTGCCGCTCTACGACCCTTCCTCAC
CCACGGCGGCCTCTTTCGCCTCAACCTCGGGCCCAAGTCTTTCGTCATCGTCTCTGATCC
AGATATAGCTAAGCATATCCTGAGGGACAACTCCAAGGCTTATTCCAAGGGTATTCTTGC
AGAAATACTGGAGTTTGTGATGGGCACGGGTCTGATCCCAGCTGATGGGGAGGTTTGGCG
TGTTCGACGGCGTGCCATTGTACCATCATTGCATCAGAAGTTTGTAACAGAGATGATAGG
TCTCTTTGGAAAAGCTTCAGGCCGGCTATGTGAGAAGTTGGACAAGGCAGCAGCGGAAGG
AGAGATTGTGGAGATGGAATCTTTGTTCTCTCGACTAACATTGGATGTCATTGGGAAGGC
GGTATTCAATTATGATTTTGATTCATTATCATACGATAATGGAATGGTTGAGGCTGTGTA
TGTAACACTACGAGAAGCAGAAATGCGGAGCACTTCTCCTATACCAACTTGGAAGATACC
CATATGGAAAGACATCTCCCCTCGACAAAGGAAGGTTAACGACGCTCTTGTGCTGATAAA
TAATATTCTTGATGAACTAATTTCGACATGCAAGAGGATGGTAGATGAAGAAGATCTGCA
ATTCCATGAGGAATACATGAATGAGCAAGATCCTAGCATTCTTCGCTTTCTATTGGCTTC
CGGTGAAGATGTGTCTAGCAAGCAGCTCCGTGATGATCTGATGACAATGCTCATAGCTGG
CCATGAGACCTCCGCAGCAGTCCTGACATGGACATTTTATCTTCTATCTAAGTATCCAAA
AGTAATGTCCAAGCTCCAAGCTG

Homology of Contig U35_23891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57290.3	644	2e-165	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g55450.1	642	2e-171
Arabidopsis v10	AT1G31800.1	595	8e-149	\| Symbols: CYP97A3, LUT5 \| cytochrome P450, family 97, subfamily A, polypeptide 3 \| chr1:11396440-11399470 FORWARD LENGTH=595