- Probe CUST_29346_PI390587928
- Source Contig U35_28262
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29346_PI390587928 | Hv_44K_v2 | TGTGGATCTGTAAATATGTGTGTCCGCGGTACTTTTGAGTAGCAGGCAGATCCTATAGAT | 612 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371248 | 2660 | 2e-24 | 2499 - 2558 | 100 | 60 / 60 | plus | ABC02358 ABC02360 ABC08892 ABC45454 |
| MLOC | AK251025.1 | 928 | 2e-24 | 746 - 805 | 100 | 60 / 60 | plus | ABC02358 ABC02360 ABC45454 |
| MLOC | MLOC_10958.1 | 2750 | 2e-24 | 1734 - 1793 | 100 | 60 / 60 | plus | ABC02358 ABC02360 ABC14804 ABC25340 ABC45454 |
| MLOC | MLOC_10957.3 | 1930 | 2e-24 | 1734 - 1793 | 100 | 60 / 60 | plus | ABC02358 ABC02360 ABC45454 |
| MLOC | MLOC_10957.2 | 1524 | 2e-24 | 1391 - 1450 | 100 | 60 / 60 | plus | ABC02358 ABC02360 ABC45454 |
| MLOC | MLOC_10957.1 | 1467 | 2e-24 | 1288 - 1347 | 100 | 60 / 60 | plus | ABC02358 ABC02360 ABC45454 |
| JLOC1 | JLOC1_7214.1 | 2258 | 8e-25 | 631 - 690 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_7213.1 | 2368 | 8e-25 | 1184 - 1243 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49539 | 587 | 3e-25 | 184 - 243 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27034 | 672 | 3e-25 | 613 - 672 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02360 | 2220 | 3e-25 | 1678 - 1737 | 100 | 60 / 60 | minus | ABC02360 |
| Harvest21 | ABC02359 | 964 | 3e-25 | 721 - 780 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02358 | 1038 | 3e-25 | 730 - 789 | 100 | 60 / 60 | plus | ABC02358 |
| Harvest35 | U35_47943 | 587 | 3e-25 | 184 - 243 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28262 | 672 | 3e-25 | 613 - 672 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_750 | 2220 | 3e-25 | 1678 - 1737 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_749 | 975 | 3e-25 | 721 - 780 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_748 | 1037 | 3e-25 | 730 - 789 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_747 | 677 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus |
Contig Sequence (672 bp)
>U35_28262 672 Hv_44K_v2 GAGGAATAGCATCCATGGCGTGCATCAATACCTTGCAGAGCTGCTCCATGTTCAAGGGGG CCAAGGCCGAGGCCAGAAGGGGCAGCAGAGCCGGCAGCGGCGGGAGCTTCGGGTGCCGGG CCTCCACGTTCATGGACGGGAGCGGGCTCCGGCTCGGGCTCGACGAGAACCCCGACGCCA TCATCTCCGGCGAGTGGCCCGAGAACTTCTCCCTCCTCAGCTACGACGACCTCCGCGCAT ACCTCCAGTCCCAGCAGCAGCAGCGGACCAGGCACTGGTGGAGGTTGAAGGACACTTCCA GCTCGTGTCAGGCCTCCCGGTTGTCGACAGCGCCCGCCGATGTGTCGGGGTCGTCGTCAA GAGCGATCGCGCGAGGGCTTCACATGGGTCAAGGACGAAGATTGCAGATGTGATGACATC TCCAGCAATCACGCTATCATGCGATAAAACAGTGACCGATGCCGCAGCTCTGATGCTCAA GAAGAAGATCCACAGATTACCGATAGTAAACCAGGACAATCAAGTAATAGGTATAGTTAC CCGCGATGACGTTCTTCGCGCGTTGGAGGCCATGCTGAAGTTTTAGAGGCGCATGAGCCC ATGCCCGGTACTTGTGGATCTGTAAATATGTGTGTCCGCGGTACTTTTGAGTAGCAGGCA GATCCTATAGAT
Homology of Contig U35_28262 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g57280.1 | 213 | 9e-63 | protein|CBS domain containing membrane protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g55440.6 | 212 | 7e-69 | |
| Arabidopsis v10 | None |