barSeed - Barley Seed Development Database

Probe CUST_29266_PI390587928

Source Contig U35_42589

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29266_PI390587928	Hv_44K_v2	TGATTTTCTGGTGTTGCTATTTATTTACATTGCAGTAGGACGACGACGGGAGGACGAGGA	292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50604.1	727	2e-24	507 - 566	100	60 / 60	plus	ABC38338 ABC39738 ABC40364
MLOC	MLOC_27389.1	279	2e-24	174 - 233	100	60 / 60	plus	ABC38338 ABC40364
MLOC	MLOC_9537.1	176	2e-24	21 - 80	100	60 / 60	plus	ABC38338 ABC40364
MLOC	MLOC_9215.1	191	2e-24	46 - 105	100	60 / 60	plus	ABC38338 ABC40364
MLOC	AK369950	3427	3e-22	3165 - 3223	98	58 / 59	plus	ABC08511 ABC12319 ABC15629 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947
Harvest21	ABC38338	569	3e-25	293 - 352	100	60 / 60	minus	ABC38338
Harvest21	ABC40364	524	5e-23	234 - 292	98	58 / 59	minus	ABC40364
Harvest35	U35_42589	569	3e-25	293 - 352	100	60 / 60	minus
Harvest35	U35_43552	524	5e-23	234 - 292	98	58 / 59	minus

Contig Sequence (569 bp)

>U35_42589 569 Hv_44K_v2
TTTTTTTTTTTTTTTTTATATGCAAAGTTGCATAACAAATTTCATGATCCATATATCAAA
ATTCCATAGCATCCATACATCCAAAATTCCATAGCATCCATATATACATATAGTTCCATA
GCATCCATACATACATAGCTCCATAGAAAATATAATACACAATGATACTTTGCGGGCATT
AGTAAGTAATACTTGGCACTAAACCAAATGCCTTCATGTCCATATCGTAGTCCAAAGGGC
ATCCGTGTGGCAATGGGTGGGTTCATCCTCCTGGTTGTAATCACCGTCGACGTCCTCGTC
CTCCCGTCGTCGTCCTACTGCAATGTAAATAAATAGCAACACCAGAAAATCACAAAGTAA
TGACATTTTTTGCAAGGTACAGAGCAATGACTGATACAATCAAATATCAATAAACATCAG
CAGAGTCAAGTATGCATGCCAATGTCATTAGCAAAGTACAGAGTAATGACCGACATAAAC
AAAATGTCAACAAACATCAGCAGAGTCAAGTATGCATGCAAATGATATTTTCAGGGTGAT
CAGATCAAAGAAAATAGCTATACAAATAC

Homology of Contig U35_42589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None