barSeed - Barley Seed Development Database

Probe CUST_29135_PI390587928

Source Contig U35_15821

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29135_PI390587928	Hv_44K_v2	GAGCATGTAATTGTAATGAGATAAGCCTTTACACGTAGCATAGCATCAATGAAATCTTCA	1175	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249008.1	1480	3e-22	1315 - 1373	98	58 / 59	plus	ABC04477 ABC04478 ABC04479 ABC12510
MLOC	MLOC_29.1	376	3e-22	104 - 162	98	58 / 59	minus	ABC04477
JLOC1	JLOC1_16.1	375	1e-22	103 - 161	98	58 / 59	minus
Harvest21	ABC04477	1250	3e-25	1176 - 1235	100	60 / 60	plus	ABC04477
Harvest35	U35_15821	1250	3e-25	1176 - 1235	100	60 / 60	plus

Contig Sequence (1250 bp)

>U35_15821 1250 Hv_44K_v2
GGCGCACTCCCATCCCATCCCATCCCATGGCGTCCGGACAACCGGCCGTGCAGACCTTTG
TTCTGAGGGTGTCCATCCACTGCCATGGCTGCAAGAAGAAGGTCCGCAAGGTGCTCAAGA
GCATCCAAGGCGTGCACGACGTGAAGGTGGATGCCCAGCAGCACAAGGTGCTGGTGACGG
GCACCGTGGACGCCGAGACGCTCGTCAAGACGCTCTACAAGTCAGGCAAGCAGGCCCTGC
CATGGCAACACACGCCTGCCAAGAACCCCGAGGCCCCGCCGCCGGCTGAGGTCAGCAGCA
ACGATGCTGCTGCGGCGGCGGACAAGAACCCGGCGGAGCCTGTGAAGGAGCCGCAGGCCG
ACGACAGCTCGGACAAGACGCCGGAGCAGGAGGAGACGGCCCCGGACAAGACGCCTGAGA
CGGAGAAGGAAGCAGAGTCTGAGAAGAAGGAGGATGAGAAAGAGGAGGCGAAAGCCATGA
AACCAAGCGCTGAGGCAAAGAAAGACGGCGGCGACGGCGAGGGCCCGGTGGCCGAGCCCA
AAGCAAAGGAGGACACAAAGGAGGCCGGCAATGACCAGGGCGAGGCCAAGGAGGAACAGA
GCAAGCCCAAGGATGCAGCTGCGGCGGACAGGTCCCTATCTCCGGCGCCGACGCCCGCGC
ACCAGGAGTTCAGCCCGTACAACGCGCCGCAGCCGGTGACGAGCTACCACACGGCGCATC
CGGCAGCGAGCGTGTCCTACTACGCGCCGCAGCCGGAGCAGGGCTACTCCACGCGGCAGC
AGCCATCGCAGCCGCAGCCCGGGTACTCCTCCCTCATGCAGCAGCAGCACCCACCGCCGG
CGCCGCAGCAGCAATGGTCGCCGTCGTACCTTTACATGCCGTACCCGCACGCGTCGCCGG
AGTCGTACTACCCGGATTACTACAGCCCGCCCGGGACGCACACGCCACCGCCACCTCCGC
CGCCGCTCCAGGACTCGTACCGCCTCTTCGACGACGAGAACCCCAACTCGTGCAGCGTCA
TGTGATTTCACCGAGACATGGACACGTGCGGCGCGGCGTAGCTCCAGCTAGCCACCGGCG
GCAGAGTAGCTAAGAAAAGGCGGCTTAAAGCTCTCCTTGACCAATCCATTTTTCCTCTTC
TTCTTTATTACTGTTATTACTGTTCTAAATATATAGAGCATGTAATTGTAATGAGATAAG
CCTTTACACGTAGCATAGCATCAATGAAATCTTCAAAAAAAAAAAAAAAA

Homology of Contig U35_15821 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None