barSeed - Barley Seed Development Database

Probe CUST_29133_PI390587928

Source Contig U35_15823

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29133_PI390587928	Hv_44K_v2	ATTCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAGAGCATCGAAGGCGTG	133	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72579.1	1443	2e-24	269 - 328	100	60 / 60	plus	ABC04477 ABC04478 ABC04479 ABC12510
JLOC1	JLOC1_48275.1	1504	8e-25	229 - 288	100	60 / 60	plus
Harvest21	ABC04480	591	3e-25	134 - 193	100	60 / 60	plus
Harvest35	U35_15823	591	3e-25	134 - 193	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_15823 591 Hv_44K_v2
GCGTCTTGAGAGCCACAGACTCGAGCGCCTGCTTCCCAAGCGAGACAAGGTGATCAGTCC
CCAGGGCGCACTCCCATCCCATCCCATGGCGTCGGGACAACCGGCCGTGCAGACCTTCGT
GCTGAGGGTGACCATTCACTGCCATGGCTGCAAGAAGAAGGTCCGGAAGGTGCTCAAGAG
CATCGAAGGCGTGCACGACGTGAAGGTGGATGCCCAGCAGCACAAGGTGATGGTGACGGG
CACCGTGGACGCCGAGACGCTCGTCAAGAGGCTGCACAAGTCAGGCAAACAGGCCCTGCC
ATGGCAACACACGCCTGCCAAGAATCCCGAGCCTGCGCCGTCGCCGTCAACCCCAACCGA
TGCCCCCGCGCCGGCCGAGGACGGCAGCAACGATGCTGCTGTGGCCGACAAGAAGCCGGC
GGTGCCTGCCAAGGAGCCGCAGACCAGCAGCTCGGACAAGAAGCCGGAGCAGGAGACGTC
CCCGGAGAAGAAGCCTGAGATGGACAAGGAAGCAGAACCTGAGAAGAAGGCTGAGAAAGA
GGAGGCGAAACCAAGCGACGAGTCAAAGAAAGCCGGCGGCGAGGGCGCGGC

Homology of Contig U35_15823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None