barSeed - Barley Seed Development Database

Probe CUST_25872_PI390587928

Source Contig U35_24570

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25872_PI390587928	Hv_44K_v2	TGGAGAACATCACCCTCAACTGGTACTTCGGCAACGACCGCTCCATGCTCGTGTCCAACT	486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74290.1	2058	2e-24	932 - 991	100	60 / 60	plus	ABC04206 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18311 ABC20877 ABC22130 ABC41736
JLOC1	JLOC1_49504.1	2480	8e-25	1363 - 1422	100	60 / 60	plus
Harvest21	ABC20903	564	3e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_24570	566	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_24570 566 Hv_44K_v2
ACCTCGTCGACTTCGCCTGCTACAAGCCCGACGACGCGCGCAAGTGCAGCCGCGCCCGCT
TCATGGACTGCACCGAGAAGCTCGGCACCTTCACCGACGACAACGTCGAGTTCCAGCGCC
GGATCGTGGAGCGCTCCGGGCTGGGCGAGGACACGTACCTCCCCGAGGCCGTGCTCAACC
TCCCGCCCAACCCCTCCATGGCCAACGCGCGGGCCGAGGCCGAGATGGTCATGTTCGGCG
CGCTGGACCAGCTCTTCGCCAAGACGGGCGTGCGGCCCAAGGACATCGGCGTGCTCGTCG
TCAACTGCAGCCTCTTCAACCCCACGCCCTCGCTCTCCGCCATGGTCATCAACCATTACA
AGCTCCGGGGCAACATCGTCAGCTACAACCTGGGCGGCATGGGCTGCAGCGCGGGGCTCA
TCGCCGTCGACCTCGCCAAGGACCTGCTCCAGGCGCAGCCCGGCACCTACGCCGTGGTGA
TCAGCATGGAGAACATCACCCTCAACTGGTACTTCGGCAACGACCGCTCCATGCTCGTGT
CCAACTGCCTGTTCCGCATGGGCGGC

Homology of Contig U35_24570 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49900.1	521	7e-120	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi2g15720.1	534	3e-112
Arabidopsis v10	AT2G26640.1	509	1e-101	\| Symbols: KCS11 \| 3-ketoacyl-CoA synthase 11 \| chr2:11330094-11331623 FORWARD LENGTH=509