barSeed - Barley Seed Development Database

Probe CUST_25328_PI390587928

Source Contig U35_38362

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25328_PI390587928	Hv_44K_v2	TTGGCTGCTTGTATCTTTGAACTTGCAAATTTATCCCCTATGATAGGAAGTAAAGATCGC	105	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250402.1	6765	7e-23	6649 - 6708	98	59 / 60	plus	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC	MLOC_67568.1	8628	7e-23	1796 - 1855	98	59 / 60	minus	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC	MLOC_67568.4	6839	7e-23	235 - 294	98	59 / 60	minus	ABC07669 ABC17988 ABC20754 ABC34305 ABC38921
MLOC	MLOC_67568.2	8046	7e-23	1790 - 1849	98	59 / 60	minus	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC	MLOC_67566.1	6862	7e-23	1780 - 1839	98	59 / 60	minus	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
MLOC	MLOC_67568.3	8388	7e-23	1780 - 1839	98	59 / 60	minus	ABC07669 ABC17988 ABC20754 ABC30471 ABC34305 ABC38921
JLOC1	JLOC1_44630.10	8006	4e-23	4920 - 4979	98	59 / 60	plus
JLOC1	JLOC1_44630.9	9225	4e-23	6139 - 6198	98	59 / 60	plus
JLOC1	JLOC1_44629.2	9904	4e-23	3028 - 3087	98	59 / 60	minus
JLOC1	JLOC1_44629.1	8563	4e-23	3028 - 3087	98	59 / 60	minus
JLOC1	JLOC1_44630.8	9333	4e-23	6247 - 6306	98	59 / 60	plus
JLOC1	JLOC1_44630.7	8813	4e-23	5727 - 5786	98	59 / 60	plus
JLOC1	JLOC1_44630.6	8182	4e-23	5096 - 5155	98	59 / 60	plus
JLOC1	JLOC1_44630.5	6818	4e-23	3732 - 3791	98	59 / 60	plus
JLOC1	JLOC1_44630.4	9550	4e-23	6464 - 6523	98	59 / 60	plus
JLOC1	JLOC1_44630.3	8548	4e-23	5462 - 5521	98	59 / 60	plus
JLOC1	JLOC1_44630.2	8905	4e-23	5819 - 5878	98	59 / 60	plus
JLOC1	JLOC1_44630.1	7324	4e-23	4238 - 4297	98	59 / 60	plus
Harvest21	ABC34305	580	3e-25	106 - 165	100	60 / 60	minus	ABC34305
Harvest35	U35_38362	580	3e-25	106 - 165	100	60 / 60	minus
Harvest35	U35_6820	1390	1e-23	1258 - 1317	98	59 / 60	plus

Contig Sequence (580 bp)

>U35_38362 580 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGAAGAACAGTAAACCCACAAATCCAAGTATGACCAATTCATA
CATAAATGTATGAACATTTTTACTGCATTCAGAGCTCATGTACATGCGATCTTTACTTCC
TATCATAGGGGATAAATTTGCAAGTTCAAAGATACAAGCAGCCAAATGTCAAAGCCTAAC
TTCCTGAAACAGTATGGTAACCAAGTAATTTATAGCCAAACCAAAATTTGATAATCTGCT
ATACAAACTGAGTATGAACTGATATTTCCATTCCGGACCCTTGTTTGAGACTTCTAGCAT
TTTCAACTCCAAGCTGCGCCAAAGAGATGAGGCCACCGAGTGCAAGTTCAAATTGAAAAC
TACCACAAAGACCAAATAACGTAATATGCTTCAGTATCACTAATCAGAAGTCCAAACCAA
TTTGATAGCTTCAGCAAGTCCCCGCACTAGCCGAATTTCCAACTCTACAATCTTGCAATA
AAACTTCCACCAATGGAGATATCAAATAGGAGGAGAATATATCCAGACAGTTCAGTCACG
CTTCGAGACACATTTGAATCCTCAACCGTGCAGGCCTGAC

Homology of Contig U35_38362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None