barSeed - Barley Seed Development Database

Probe CUST_24228_PI390587928

Source Contig U35_20759

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24228_PI390587928	Hv_44K_v2	CCTTCATATATATCGGCAAGTATATATCGATTGTAACACTTGGGGATTTGCCAATATATC	1389	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34565.6	4086	2e-24	2402 - 2461	100	60 / 60	plus	ABC06725 ABC07662 ABC07663 ABC11306 ABC16504
MLOC	MLOC_34565.5	2852	2e-24	2775 - 2834	100	60 / 60	plus	ABC11306 ABC16504
MLOC	MLOC_34565.2	3147	2e-24	2986 - 3045	100	60 / 60	plus	ABC11306 ABC16504
MLOC	MLOC_34565.7	1493	2e-24	1379 - 1438	100	60 / 60	plus	ABC16504
MLOC	MLOC_34565.3	3181	2e-24	2973 - 3032	100	60 / 60	plus	ABC11306 ABC16504
JLOC1	JLOC1_22303.3	2655	8e-25	2441 - 2500	100	60 / 60	plus
JLOC1	JLOC1_22303.2	2812	8e-25	2598 - 2657	100	60 / 60	plus
JLOC1	JLOC1_22303.1	2698	8e-25	2484 - 2543	100	60 / 60	plus
Harvest35	U35_20759	1475	3e-25	1390 - 1449	100	60 / 60	plus

Contig Sequence (1475 bp)

>U35_20759 1475 Hv_44K_v2
ACACCTCGCAGCACAAGCTTCTGATTTGAGTAATTACAAGCTACTTGTGGAACGCTTGTT
CCAGGTTGTTGGAAGGCAGGAGGAAGCCTTGAGTGCTATTTGTGGTTCCATTGTGCGGTG
CAAGTCAATGGAGAGGCGCCGTGGTGCATGCAAGAAGAATGACATGTGGTTTAGCTTTCA
TGGTTCTGATTGCATGGCCAAGCGCAGAGCTGCTTTGGCGCTTGCAGAGCTCGTACATGG
CAGCAAAGAGAACATGATTTATCTGGACCTGAGTCTCCAGGATTGGGCCGACTCAAGTTA
CAGAGGAAAGACTGGCACTGACTATATTGTTGACGAGCTGAGCAAGAAACGGCGATCTGT
CATCTTCCTTGATAATGTCGATAAAGCTGACTGCCTTGTCCAGGACACTCTGACTCATGC
CAGTAAGACTGGTAGATTCCGAGACTTGCGTGGCAAGGAAGTTGACATTAATGACTCCAT
TGTTGTGCTGTCAACAAGAATAACCAGAGGCTCCAAAAGTGTGTCTGTTGGAGTGGAAGA
GGGTCATACTTTCACTGAAGAAAAGATCTTGGCAGCTAGTGGACATCAACTGAAGATCCT
GGTAGAATCATGTACGGCGATCACCTGCGAAGACCATGGTGATAAGGTGATAGTTTCCCC
TGGGCACCCTCTCGCCAAAATTCGTGCATCTTTGCACTGTGGGGGTTCAGTCAGCAAACG
GAAGTTCAACATTTCTGATGATCAAGAAAAGCTGCAGGAAGAATCACCGAGCATTTCCAA
GCGACTGCACAGAACATCAAGTGTTCCGTTCGACCTGAACCTCCCCATCGACGAGGATGG
TTTGAGCGATGCTGATGACCACAGCGGCAGCAATGACAACTCATATGGCACTCCAGAGAG
ATCCATCGACAGCCTCTTGTGTTTGGTTGATGAGTCAATCGATTTCAAGCCATTTGACTT
TGACAAAGTCGCCGATTACGTGCTGCAGGAGTTGAGCAATACACTCCGCAAAGTTCTGGG
CTCCGGCTGCACACTGGAAATTGATGTCGGTGCAATGGAGCAAATAATTGCAGCGGTATG
GGTATCCGAGGGCAAGAGGCCTCTCCAGGCCTGGGTGGATCAGGTGTTCACTGGAAGCCT
TGGGGAACTGAAGGTCAAGTGTGGTAAGTATGCCAGCAGTTCCACTCTTATACTAGTGGC
CTGTGAGGACATGGCAGCAGTCACGGAAGACTATGGTTTTGGAGGTTTGCTCCCCTCTAG
AATAATTCTAGAATGGTGAATTGGTGGTATCTGTATAGGGATAATTGTAATTATTTCTAG
CTATTAGTCCACAATAGTATAGCATTATTTTGCCGGGAAATAATTTCTAGCCTAGTTGAT
GATGCATTGCCTTCATATATATCGGCAAGTATATATCGATTGTAACACTTGGGGATTTGC
CAATATATCATTGTTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01360.1	1130	1e-170	protein\|expressed protein
Brachypodium v1_2	Bradi4g26750.1	1123	0.0
Arabidopsis v10	None