barSeed - Barley Seed Development Database

Probe CUST_23965_PI390587928

Source Contig U35_15567

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23965_PI390587928	Hv_44K_v2	ATGGCCGTGCCTTTGTAAACCAAATTTGACTGCAATCAATTGAAAGGCAATGATTATCAT	1663	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57439.1	1314	2e-24	655 - 714	100	60 / 60	minus	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC	MLOC_57438.2	692	2e-24	568 - 627	100	60 / 60	minus	ABC03372
MLOC	MLOC_57439.2	1282	2e-24	482 - 541	100	60 / 60	minus	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
JLOC1	JLOC1_37232.1	786	8e-25	608 - 667	100	60 / 60	plus
Harvest21	ABC44435	511	3e-25	17 - 76	100	60 / 60	minus
Harvest21	ABC03372	1743	3e-25	1664 - 1723	100	60 / 60	plus	ABC03372
Harvest35	U35_15567	1747	3e-25	1664 - 1723	100	60 / 60	plus

Contig Sequence (1747 bp)

>U35_15567 1747 Hv_44K_v2
GGCCTTCTCTTGCTCTAACACTCTAGCACACGCACATGGACTCGAGGGTGCCGATGGCTG
CGTGGTGGGTTTGTGGATTCCTCCCGCTCCTGGCGGTGGCCGCGGCCGCGGCCGCCGCGG
AGCCGCCGTCGGAGACTGGGCATGCCCCTGCCCCAGCGCCTGGCCCGTCAGCGCCGGGTG
AAGGGGTGACCAAGTGGGCCGTGCTCGTTGCGGGCTCCTCCGGCTACGGGAACTACCGGC
ACCAGGCCGATGTGTGCCATGCCTACCAGATCCTGAAGAAGGGAGGCCTCAAGGACGAGA
ACATTGTGGTGTTTATGTACGATGACATCGCCAACAACCCTGACAACCCAAGGCCTGGAA
TCGTCATCAACCATCCTAAAGGCAAAGATGTTTACGCGGGTGTTCCCAAGGACTACACCG
GTGACCAGGTCACTGCTGACAACTTCTATGCGGTTCTCCTGGGGAACAAAACTGCCGTTA
CCGGAGGGAGTAGGAAGGTGATAAACAGCAAACCAAATGATCACATCTTCATCTACTACA
CGGATCATGGGGCTGCTGGTTTACTTGGTATGCCCAACCCGCCAGATGTTTATGCCGACA
ACTTCATCGAAGTGCTACGGCAAAAACATGCTTCCAAAAGCTATTCGAAAATGATCATAT
ATGTTGAAGCGTGTGAAAGTGGCAGCATCTTTGAGGGTTTGCTTCCACAAGATCATAATA
TTTATGTTACAACGGCAGCAAATGCGGTAGAAGATAGCTGGGCAGCATACTGCCCTAAGA
TGGAAATACCACCTCCTCCTGAATATTGTACCTGTTTAGGTGATGCATACAGTGTTTCTT
GGATGGAAGACAGTGAAACTCAAGATCTAAAGAAGGAAAGCATCAAGCAGCAGTACGAGG
TGGTTAAAGCGAGAACGGCACCCCGAAACGAGTCAAGTATAGGCTCTCATGTCATGGAGT
ATGGTGACCAGACATTCAAGGAAGACATGCTTTTCCTCTATCAAGGTTTCGATCCTGCAA
AGTCAAGCATCAGAAACAGGCCGCTGCCTATGCCCAGCCTCAAGGGTGCAATCAATCAAA
GAGATGCCGATATTCTTTTCATGTGGAGGAAGTATGAGAAGTTAAATGCGGGATCGGAAG
AGAAGCAGAGGGCTCTCAGGGAGGTCAAAGAAACCGTGCTACACAGGAAGCATCTGGACA
GCAGAATCGATTTCATCGGGAAGCTTGTCTTTGGATTCGACAAGGGGCCTTCGGTGCTCC
AGGCTGCCAGAGGCTCTGGCCAGCCATTGGTCGACGATTGGGATTGTCTGAGGACGATGG
TGCGAGTGTTCGAGTCCCAGTGCGGATCACTCACTCAGTACGGCACGAGGCACATGAGGG
CGTTCGCAAACATCTGCAACAATGGTGTCTCCGAGGCCGAGATGAAGGAGGCGAGCATCA
GCGCTTGCAACGGCTACGACATGGGGAAGTGGAACCCTCTGGTTCTAGGGCACAGCCCTG
ATCCGCTTGCAGTGCTGTAGTATATGGGAGCAGTACCAAATGCTCCAGAGGTTCCTAGCT
AGGCCTCATATATGGTGTACATACAACATACACTGGTATAGATACCTCTAAAAGAAACCA
CGCAACAATGGCGCCCCATGTGTGTTGGGTTAATCAGTAGCTTATGGCCGTGCCTTTGTA
AACCAAATTTGACTGCAATCAATTGAAAGGCAATGATTATCATAAAAAAAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_15567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g43010.1	497	protein\|vacuolar-processing enzyme precursor, putative, expressed
Brachypodium v1_2	Bradi5g16960.1	489
Arabidopsis v10	AT1G62710.1	486	\| Symbols: BETA-VPE, BETAVPE \| beta vacuolar processing enzyme \| chr1:23224070-23226857 REVERSE LENGTH=486