barSeed - Barley Seed Development Database

Probe CUST_23819_PI390587928

Source Contig U35_42131

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23819_PI390587928	Hv_44K_v2	AATAAAAACTGTATTGCCCAACTCAGGTGAAATTTTCAGCAGCTATACAAATCCTGTGTG	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4817.1	602	3e-21	396 - 455	97	58 / 60	plus	ABC03284 ABC03285 ABC03286 ABC03287 ABC03288 ABC03289 ABC32683
JLOC1	JLOC1_3053.1	511	2e-21	396 - 455	97	58 / 60	plus
Harvest21	ABC37566	161	3e-25	23 - 82	100	60 / 60	minus	ABC37566
Harvest35	U35_42131	161	3e-25	23 - 82	100	60 / 60	minus

Contig Sequence (161 bp)

>U35_42131 161 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAACACACAGGATTTGTATAGCTGCTGAAAATTTCACCTGA
GTTGGGCAATACAGTTTTTATTCAGGCAAAGCAGGAAAACATTTGGATTTCCATTAAGGG
AACATCACGAACAGACAGTCCACCCCCTTTTTTTAAAATAA

Homology of Contig U35_42131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None