barSeed - Barley Seed Development Database

Probe CUST_21183_PI390587928

Source Contig U35_14860

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21183_PI390587928	Hv_44K_v2	GGTCGTTTGTGTACTTGTGTAATCGCAATGAATAAATGTAGTACCTGATGCACTAAAAAA	660	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362925	2689	9e-22	680 - 734	100	55 / 55	plus	ABC02002 ABC02004 ABC02006 ABC02007 ABC02008 ABC02012 ABC02014 ABC04119 ABC21725 ABC31513 ABC31735
MLOC	MLOC_44537.1	686	9e-22	316 - 370	100	55 / 55	minus	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
JLOC1	JLOC1_28871.1	396	5e-22	24 - 78	100	55 / 55	minus
Harvest21	ABC02004	731	3e-25	661 - 720	100	60 / 60	plus	ABC02004
Harvest21	ABC02015	729	2e-22	670 - 724	100	55 / 55	plus
Harvest35	U35_14860	731	3e-25	661 - 720	100	60 / 60	plus
Harvest35	U35_14862	753	2e-22	690 - 744	100	55 / 55	plus

Contig Sequence (731 bp)

>U35_14860 731 Hv_44K_v2
GGAGCGCCAAGCAAAAGCAGACAGCATCCTACCTACGATCCGATACTGAATTTTCCCTCA
GTTACAAAATCCAAAGCAGCACCGAGGATGTCGATCGTGCGGCGGAGCAACGTGTTCGAC
CCCTTCGCCGACCTCTGGGCCGACCCCTTCGACACCTTCCGCTCCATCGTCCCGGCGATC
TCAGGCAGCAACAGCGAGACAGCAGCGTTCGCGAACGCCCGGATGGACTGGAAGGAGACG
CCTGAGGCACACGTCTTCAAGGCTGATCTTCCTGGTGTGAAGAAGGAGGAGGTCAAGGTG
GAGGTGGAGGACGGCAACGTGCTCGTCGTCAGCGGCGAACGCACTAAGGAGAAGGAGGAC
AAGAACGATAAGTGGCACCGCGTGGAGCGTAGCAGCGGCAAGTTTGTGAGGCGCTTCCGC
CTGCCGGAGGACGCCAAGGTGGAGGAGGTGAAGGCCGGGCTGGAGAACGGTGTGCTCACC
GTCACCGTGCCCAAGACAGAGGTCAAGAAGCCCGAGGTGAAGGCCATCGAGATCTCCGGC
TGAGTATTCGAGTCGGAGCCATTCTGGTTGATGTGTGTGCGAGTTCTGCAGCCTAAATAC
AGTTGTGATTTGTTCTTGTCGAGTCTGGTTGAGGCATCTCTGTATCGCGTTTCTTTCCTC
GGTCGTTTGTGTACTTGTGTAATCGCAATGAATAAATGTAGTACCTGATGCACTAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04370.1	151	5e-62	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi2g02400.1	155	3e-65
Arabidopsis v10	AT5G59720.1	161	4e-51	\| Symbols: HSP18.2 \| heat shock protein 18.2 \| chr5:24062632-24063117 FORWARD LENGTH=161