barSeed - Barley Seed Development Database

Probe CUST_21181_PI390587928

Source Contig U35_14862

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21181_PI390587928	Hv_44K_v2	GTCGTTTGTGTACTTGTGTAATCGCAATGAATAAATGTAGTACCTGATGCACTATCAAAA	690	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362925	2689	2e-24	681 - 740	100	60 / 60	plus	ABC02002 ABC02004 ABC02006 ABC02007 ABC02008 ABC02012 ABC02014 ABC04119 ABC21725 ABC31513 ABC31735
MLOC	MLOC_44537.1	686	2e-23	312 - 369	100	58 / 58	minus	ABC02002 ABC02004 ABC02007 ABC02008 ABC02014 ABC31513
JLOC1	JLOC1_28871.1	396	1e-23	20 - 77	100	58 / 58	minus
Harvest21	ABC02015	729	4e-24	671 - 728	100	58 / 58	plus
Harvest21	ABC02004	731	6e-22	662 - 715	100	54 / 54	plus	ABC02004
Harvest35	U35_14862	753	3e-25	691 - 750	100	60 / 60	plus
Harvest35	U35_14860	731	6e-22	662 - 715	100	54 / 54	plus

Contig Sequence (753 bp)

>U35_14862 753 Hv_44K_v2
GCCTCCATCCCAAGTTCCCAACTCAACCGAGTGCCAAGCAAAAGCAGACAGCATCCTACC
TACGATCCGAGATACTGAATTTTCCCTCAGGTACAAAATCGAAAGCAACACCTACAATGT
CGATCGTGAGGCGTAGCAACGTGTTCGACCCCTTCGCCGACCTCTGGGCGGACCCCTTCG
ACACCTTCCGCTCCATCGTCCCGGCGATCTCAGGCGGCAACAGCGAGACAGCTGCGTTCG
CGAACGCCCGGATGGACTGGAAGGAGACGCCCGAGGCGCACGTCTTCAAGGCTGATCTTC
CTGGCGTGAAGAAGGAGGAGGTCAAGGTGGAGGTGGAGGACGGCAACGTGCTCGTCGTCA
GCGGCGAACGCACTAAGGAGAAGGAGGACAAGAACGACAAGTGGCACCGTATGGAGCGTA
GCAGCGGCAAGTTCGTGAGGCGCTTCCGCCTGCCGGAGGACGCCAAGGTGGAGGAGGTGA
AGGCCGGACTGGAGAACGGTGTGCTGACGGTCACCGTACCCAAGGCCGAGGTGAAGAAGC
CCGAGGTGAAGGCCATCGAGATCTCCGGCTGAGTATTCGAGTCGGAGCCATTCTGGTTGA
TGTGTGTGCGAGTTCTGCAGCCTAAATACAGTTGTGATTTGTTCTTGTCGAGTCTGGTTG
AGGCATCTCTGTATCGCGTTTCTTTCCTCGGTCGTTTGTGTACTTGTGTAATCGCAATGA
ATAAATGTAGTACCTGATGCACTATCAAAAAAA

Homology of Contig U35_14862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04370.1	151	9e-61	protein\|hsp20/alpha crystallin family protein, putative, expressed
Brachypodium v1_2	Bradi2g02400.1	155	2e-63
Arabidopsis v10	None