barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_1960_PI390587928Hv_44K_v2AGGGAACAAGAAGTTTCGTTTATTATAAGGTTGTTATGTGTGATCAACAAAAACGTGTGC216GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35979825727e-232447 - 25069859 / 60plus ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC21257 ABC30713 ABC47321
MLOCAK251926.114287e-231143 - 12029859 / 60plus ABC01494 ABC01497 ABC05377 ABC08513 ABC13191 ABC16434 ABC18776 ABC21257 ABC30713 ABC38369 ABC40626 ABC46208 ABC47321
JLOC1JLOC1_690.210984e-23836 - 8959859 / 60plus
JLOC1JLOC1_690.110764e-23814 - 8739859 / 60plus
Harvest21ABC473213243e-25217 - 27610060 / 60minusABC47321
Harvest35U35_467803243e-25217 - 27610060 / 60minus



Contig Sequence (324 bp)

>U35_46780 324 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAAATTAGTTGTATAAATTTCATTTCAGTAACACATCACATG
AATTACAATACATCATCCATCGACTCCTCTATACATAAAGGTTCAAGACCCAACAAATGC
ACAAGAAAATAGTTCTACAAATGCAGGTGTACAGCAAAAGGTCCCAACAAGTGCATAATC
ACACATCAATATAGTTCGACAGGGATTGAGTGAGAAGCACACGTTTTTGTTGATCACACA
TAACAACCTTATAATAAACGAAACTTCTTGTTCCCTCCGCCTGTCCGGTCCTCTACTTCT
TCTGGGTGCTTCAGATCACCCTGG



Homology of Contig U35_46780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None