barSeed - Barley Seed Development Database

Probe CUST_15816_PI390587928

Source Contig U35_13768

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15816_PI390587928	Hv_44K_v2	TAAAGTTTGCACCAGGTCGTCGAACCATGTCCAAGGAGGAGGTGATCGCCGAAGGCGACA	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359099	1244	7e-23	38 - 97	98	59 / 60	plus	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC	AK365197	696	7e-23	37 - 96	98	59 / 60	plus	ABC19393
MLOC	MLOC_552.1	1349	7e-23	37 - 96	98	59 / 60	plus	ABC01219 ABC01222 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
MLOC	MLOC_552.2	1024	7e-23	29 - 88	98	59 / 60	plus	ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01237 ABC01242 ABC19393
JLOC1	JLOC1_340.1	1283	4e-23	106 - 165	98	59 / 60	plus
Harvest21	ABC17866	350	1e-23	25 - 84	98	59 / 60	plus
Harvest35	U35_13768	421	3e-25	9 - 68	100	60 / 60	plus

Contig Sequence (421 bp)

>U35_13768 421 Hv_44K_v2
ACTCCTACTAAAGTTTGCACCAGGTCGTCGAACCATGTCCAAGGAGGAGGTGATCGCCGA
AGGCGACACGGCGGACGTGGCCGTGGAGAAGGCGCCGTACTGGGACCCGCCGCCGGCACC
TCTGCTGGACACGAGCGAGCTGACCCGGTGGTCACTGTACCGCGCGGTCATCGCCGAGTT
CGTGGCCACGCTCATCTTCCTCTACGTCAGCCTCGCCACCGTCATCGGCTACAAGAGCCA
GTCCTCCGCCCAGCCCTGCACCGGCGTGGGGTACCTCGGCGTCGCCTGGGCCTTCGGCGC
CACCATCTTCGTCCTCGTCTACTGCACCGGCGGCGTCTCGGGTGGTCACATCAACCCGGC
GGTGACGTTCGGGCTGTTCGTGGGGAGGAAGCTGTCGCTGGTGCGCACGGTGCTGTACAT
C

Homology of Contig U35_13768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36930.1	291	3e-67	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi4g36601.1	291	3e-72
Arabidopsis v10	None